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Information for unigene UN41923
| FASTA Sequence |
| Unigene ID: UN41923 | Length: 852 |
SSR | | GGATCACACATTATCCGCGCCTCCTCGGTTCCAAAGAATTTGCCCTAAGCTCTCAAAATTGAGACTAGAGCACCACCTTAAACGCC
ACTCTCAGCTCTCTCTCTCTCCTCGTCAAGTGTTGATCTTTAGACCAGTAATGGGGAAAGAGAGCAGCAAAGCCTCGAGCTTGAAA
GCAGAGCAGAAAGTGATTGTTCTCCGTTCGGTCGCTCAGTACTTGGAGCGATGTGGGTTTTCTAAATGCTTCAAGAAGCTTCTCTC
CGAAGCTGAAATCGAGAAGAAGGAATTGAACAGTAGCTTACCGGATATAGAGGAAGTTTTCTGCGATTTTTTTAACAAGAGCCATG
TTGATGATAATGAGGATGGGAAGAAGAAGAAAGCAGCAAGTATAGATGAGAATGCATCTGTTGATCACCAAAAGGACGAGAAGAAA
GATAAGAAGAAGAAGAAAAAGAAGGAACCAGAACTGGAGGTAGCTAAGGAGGAGGAGAAGGTCAAAGAGACTGATGGTGAGATTGA
AGACAGACTGAAAGAGAAAAAGAAGAAGAAGAAAACCAAGTCGAAGTCTAGCGAGGCTGAGTCTTTGGTTGAAGATGAGGATAAGG
AGAAATCCTCCAAGAAAAGGAAAAGATCAGAGCCTGAAGAGACAAAAGAAGAGACCGAGGAGGATGATGATGAGGGATCAAAGCGG
AGGAAGAAGGAAGAGAGTGTAGTGGAAGAAACGCCTGTTAAGCAGCAGCTGATGATGTTCAGAAAACGGTAACGTTGAGAAAGCGA
AAGAATCAGAAAAGCCTTTCTACTCTAAGAGCGAAGAAACGTTTCAGAGAGTGACGTTGAAGATGTGTCTCACTGACG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200522 uncharacterized protein [Arabidopsis thaliana] | 454 | 4e-043 |
| AAM61154 unknown [Arabidopsis thaliana] | 450 | 1e-042 |
| XP_002866185 hypothetical protein ARALYDRAFT_495806 [Arabidopsis lyrata subsp. lyrata] | 436 | 5e-041 |
| XP_001068849 PREDICTED: hypothetical protein [Rattus norvegicus] | 217 | 1e-015 |
| CBZ55484 conserved hypothetical protein [Neospora caninum Liverpool] | 217 | 1e-015 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55FI4 Nucleolar protein 58 | 203 | 2e-015 |
| P36044 Protein MNN4 | 189 | 1e-013 |
| Q54T81 Probable H/ACA ribonucleoprotein complex subunit 4 | 184 | 4e-013 |
| Q869E1 DNA ligase 1 | 180 | 1e-012 |
| P54696 Myosin-H heavy chain | 180 | 1e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LU74 AT5g57120/MUL3_6 | 454 | 3e-043 |
| Q8LFX8 Putative uncharacterized protein | 450 | 9e-043 |
| A2FPT6 Erythrocyte binding protein, putative | 220 | 4e-016 |
| A2F9I8 Putative uncharacterized protein | 202 | 5e-014 |
| B9PIQ9 Calmodulin-binding domain containing protein, putative | 199 | 1e-013 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G57120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink). | 454 | 2e-045 |
| AT1G56660.1 unknown protein | 181 | 8e-014 |
| AT3G28770.1 unknown protein | 169 | 2e-012 |
| AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase | 164 | 7e-012 |
| AT5G60030.1 unknown protein | 152 | 2e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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