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Information for unigene UN41985

FASTA Sequence
Unigene ID: UN41985Length: 1420 SSR 
GGAGAGAGAAGATTTACGAGTAAAACCCTAATTTTTGTACGATGAGCAATGTCGGTGAGAAATTGGTTGGGGAGAAGAAAGAGGCA
GCAGCGCAGCAGCCGCAACAGTTTCTGACGATGAATGCGAAGCTCTACTCTCTGGAGAGGTTCCAAGAAGATTTTGCTGATGTCTC
GGTAAAGGAGGTAGATTTGCTCAAAGAGTTGGAGGTATCCAAAGTATATCACTGCGATGGGTTGGTGTTATGCGTGGCTAAGGACA
AGAAGGAGGAACCGAAGCTGGTGTTGTGGAACCCTTATCTGTGTCAAACAAGGTGGATCGAACCGAGAGTAGAGTTCAACAAAAAT
AACAGGTTCGCGATCGGATCCGACGACGAGCGCAACCACAAAATCATGAGGTTAGTGGATGCTTACACCTCTGGACCAGAAGAACG
CAAACACGAGGTTGTGTGCGAAATCTATGAAATTAGGTCTAATTCATGGAGGGTTCTCGATGTGGTGAAGGATAATTCCAAGTGGT
CGATAGATATGGATCAGCGAGGCGTGTCTGTCAAGGGAAACACCTACTTTTTTGCTCATCATCTTGCAGAAAGAGTTTTTAGAGGA
CTCGTCCTTAAACAGGAGGAAATTTTCTTAATCTGTTTTGATTTTGCCAAGGAGAGGTTTGGACCACGCCTCCCTTTTCCTTTTGA
CTCTTTCGATGGTTTCAATGGTGACCTTGTGACCCTCTCAAGCTTCGTTAGCGGTGGTGGTGGTGGTGATGAGCAGCTTGCGGTCC
TCTTTGGTGGTTATGAATCTGGCTTTTTTGAGATTTGGGTTACCCTTACTGTCGACCCCAACGGTGCGTCCTGTAGCAAGTTTTTG
CGAATGGAACCGGGGCCCTTCTGTAGCTACGGTTTTCAGCTCTATCCATCTTCTGGTGGGAGCTTCCTTGTTGATGAGGACAACAA
ACTTGCTGTCTTGTTTGAACTAGACGAAACCCAGACCACTCACAAGGCTTTTGTGTTTGGACAGGACGGCTCCTTCAAATCCTCCG
TCAGCCTCGGACAAGCTCTCTTACTTGAAAACCGTTCTTATAACAAACTCTACAAAGCTGCTCGTCCCCCACTTGTTTGCTCTTCC
CCTTATCGTCCAAGCTCAGTCCAACTCAACCAACCGAATGTTTGAGATTTGAGGAAACGCATGTGCTCAGAGATCAAGTGATTGAG
GATGCTAATCTGACAAGTTTGAGATGTGGAAACTCTTTTATCTTAGGTTGTGATCGCAGTTCGTCTATGTAACCTCTTTTTGTCTC
AAGACTTTTTTATCCATCTCTTCCGTTTGGCAGATTTGTTTTTAAGACACTATTATTTTATATACTTATGTTTAAGCTCTTGTGTT
TTTGACATTGCCCCCTATTGTTTTCATTGTCAATCTTGTGTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001117347 F-box protein [Arabidopsis thaliana]6492e-065
AAL86342 putative F5A9.18 protein [Arabidopsis thaliana]6492e-065
BAF00445 hypothetical protein [Arabidopsis thaliana]6492e-065
BAD94008 hypothetical protein [Arabidopsis thaliana]6457e-065
AAG03128 F5A9.8 [Arabidopsis thaliana]6384e-064

Swiss-Prot top hits (Blast detail)Scoree value
Q8GRJ5 F-box/kelch-repeat protein At1g24800/At1g24881/At1g25055/At1g25143/At1g252116491e-066
Q9LID1 F-box/kelch-repeat protein At3g136804142e-039
Q9FKJ1 Putative F-box protein At5g605603837e-036
Q9SA94 F-box protein At1g118103406e-031
Q9LV45 Putative F-box protein At3g245803317e-030

TrEMBL top hits (Blast detail)Scoree value
Q9CA01 Putative uncharacterized protein T1G12.223883e-035
Q058M6 At2g178302907e-024
A0MEV9 Putative uncharacterized protein (Fragment)2593e-020
Q9LSB7 Emb|CAB10501.12172e-015
Q9LHQ2 Gb|AAD03575.11974e-013

Arabidopsis top hits (Blast detail)Scoree value
AT1G24800.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).6498e-068
AT1G25211.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25055.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).6498e-068
AT1G24881.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).6498e-068
AT1G25055.1 CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).6498e-068
AT1G25141.1 UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-box protein-related6363e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  67%
 
121  33%

Unigene MembersMember information