RadishBase

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Information for unigene UN42017

FASTA Sequence

Unigene ID: UN42017	Length: 1002	SSR
GGGGCTTTTCAGAACTCTTTTGCCGGCGATCCCCGTCTCTCTCTCTCTCCGAATAGGCAATTGAGATGGCAACTCCAATGGTAGAA GACACGTCAAGCTTCGAAGAGGATCAGCTCGCGTCCATGTCCACCGAAGACATCGTTAGAGCTACTCGTCTCCTCGACAACGAGAT TCGAATTCTCAAGGAAGATGCACAAAGAACAAATCTAGAATGCGATTCTTACAAGGAGAAGATAAAGGAGAATCAGGAGAAGATTA AACTCAACAAGCAGCTTCCTTACTTGGTTGGCAACATTGTTGAGATATTGGAGATGAATCCGGAAGATGATGCTGAGGAAGACGGT GCTAATATCGACCTTGACTCTCAAAGGAAGGGAAAGTGTGTTGTCTTGAAAACATCTACACGACAGACAATCTTTCAATCAGCTTG ATGGATTCAGTAGCGATGAGCGTATTAAGGTGATAGCAGCCACTAACCGTGCAGATATTCTGGACCCAGCACTCATGCGTTCTGGT CGACTAGACAGGAAGATTGAGTTCCCACATCCAACGGAAGAAGCAAGAGCCAGAATCTTGCAGATTCACTCGAGGAAGATGAATGT ACACCCAGACGTCAACTTTGAGGAGCTTGCAAGATCGACAGATGATTTCAATGGCGCTCAACTGAAAGCTGTATGTGTGGAGGCTG GCATGTTAGCTTTTCGTCGCGATGCCACAGAGGTGAACCATGAGGACTTCAATGAAGGTATAATCCAAGTCCAGGCCAAGAAGAAA GCAAGTTTGAACTACTACGCCTAGTCTCTCCCTGTCAGTTATATTCGTGTTTGCTCTCTATCTTTCAACTAGTGTTTATTCCGGTT GGAAACTTTTCATATTTTCGAATCAGGATATCTTTTATCAAAGTGCATTTAGTTTTGTTCATCTTATTTTTCTTCTGAAACAAGAA AAGGAACTTTAATAGTTTACCACCTCTTATAATTTTATTGTTGAATTGTGTTTGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
O23894 RecName: Full=26S protease regulatory subunit 6A homolog; AltName: Full=Tat-binding protein homolog 1; Short=TBP-1	631	2e-063
NP_187204 regulatory particle triple-A ATPase 5A [Arabidopsis thaliana]	631	2e-063
BAB21595 Tat binding protein like protein [Brassica rapa]	631	2e-063
AAN15459 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]	631	2e-063
XP_002319515 predicted protein [Populus trichocarpa]	624	1e-062

Swiss-Prot top hits (Blast detail)	Score	e value
O23894 26S protease regulatory subunit 6A homolog	631	7e-065
Q9SEI2 26S protease regulatory subunit 6A homolog A	631	7e-065
P54776 26S protease regulatory subunit 6A homolog	615	5e-063
P46465 26S protease regulatory subunit 6A homolog	611	2e-062
O04019 26S protease regulatory subunit 6A homolog B	609	3e-062

TrEMBL top hits (Blast detail)	Score	e value
Q9AYS9 Tat binding protein like protein	631	1e-063
B9I7I1 Predicted protein	624	7e-063
C6TAN1 Putative uncharacterized protein	624	7e-063
B7FKW8 Putative uncharacterized protein	623	1e-062
B9N4I9 Predicted protein	622	1e-062

Arabidopsis top hits (Blast detail)	Score	e value
AT3G05530.1 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding	632	5e-066
AT1G09100.1 RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding	610	2e-063
AT4G29040.1 RPT2a (regulatory particle AAA-ATPase 2a); ATPase	323	3e-030
AT2G20140.1 26S protease regulatory complex subunit 4, putative	321	6e-030
AT5G19990.1 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A); ATPase	319	1e-029

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			100%

Unigene Members	Member information