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Information for unigene UN42026
| FASTA Sequence |
| Unigene ID: UN42026 | Length: 1297 |
| SNP | GGACTATATAGAAGCTTTAGTTGATGTCTTACTCCAGGATCCTCAGCCACAACAGCTTCCTCTCTCTCGCTACAAAGTTCACTACT
CGTGGATCTCGTAAACATCATCGCAATCCACTCTGTACACTATCAATGGCTAGATCTGCGGTTGATGAGACATCAGACTCCGGAGC
ATTTCAAAGAACTGCCTCAACGTTCCGTAACTTCGTCTCAAGAGATTCCAATTCTCAGTTTCCAGCTGAATCTGGTAGATACCATC
TTTACATATCTTATGCTTGTCCATGGGCTTCTAGATGCATCTCATACTTGAAGATCAAAGGACTTGACGATGCAATAAGCTTCTCG
TCTGTTAAACCCATTTGGGGAAGGACCAAGGAAAGTGATGAGCACATGGGATGGGTCTTCCCGGATTCAGACGCTGAGGTTCAAGG
AGCTGATCCTGACCATCTTAATGGTGCTAAGAGTGTAAGAGAACTCTATGAGATTGCTAGCCCAAACTACACCGGGAAGTATACTG
TTCCTGTTCTGTGGGATAAGAAGCTGAAGACTGTTGTGAACAATGAGAGCGCTGAGATTATCAGGATGTTCAACACCGAGTTCAAT
CATATTGCTAGAAACCCTGATCTTGATCTTTACCCTTCTCAACTCCAAGCTAAAATCGATGAAGCTAATGAATGGATTTACAGTGG
GATTAATAATGGTGTCTATAGGTGCGGTTTTGCAAAGAAACAAGAACCTTACGAGGAGGCAGTGCAACAAGTGTATGAAGCATTAG
ATAGATGCGAGGAGATTCTTGAAAAGCATCGTTACATCTGCGGTAACACTCTGACTGAAACAGATATCAGATTGTTTGTGACACTA
ATAAGATTTGACGAGGTTTACGCGGTTCACTTCAAATGCAACAAGAAACTCTTAAGAGAGTATCCGAATCTGTTCAACTACACGAA
AGACGTATTTCAAGTCCCTGGTATGAGTAGCACCGTGAACATGAATCACATCAAGCAGCATTACTATGGAAGCCACCCTTCGATCA
ACCCTTTTGGGATCGTCCCTCAGGGGCCAAACATCGATTACTCCTCGCCTCATGATCGACACAGATTCTCCAAATGATAAATAACC
AGTCTTTCGCACTTGAGTTCTGTCTTCAGAAGTTTCCAAATAAAGTTTGTCTTTGAATAGCATATACTTTGAGAAAAATAAAAGCC
TGATGTTTATCATGTTACAGTTTGCAGACTTGCAGTCTCAGAAGTTGAGACCTGAGACAATGTTGGTCTGATCATAAATAAACTTT
ACTTCCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_193723 Intracellular chloride channel-like protein [Arabidopsis thaliana] | 1756 | 9e-194 |
| AAK44087 unknown protein [Arabidopsis thaliana] | 1745 | 2e-192 |
| XP_002865303 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1483 | 4e-162 |
| CBI27161 unnamed protein product [Vitis vinifera] | 1481 | 7e-162 |
| XP_002277886 PREDICTED: hypothetical protein [Vitis vinifera] | 1480 | 9e-162 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42620 Uncharacterized protein yqjG | 800 | 3e-084 |
| O94524 Glutathione S-transferase omega-like 2 | 663 | 2e-068 |
| P36156 Glutathione S-transferase omega-like 2 | 292 | 2e-025 |
| Q04806 Glutathione S-transferase omega-like 3 | 257 | 2e-021 |
| P48239 Glutathione S-transferase omega-like 1 | 225 | 1e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8H121 Putative uncharacterized protein At4g19880 | 1756 | 6e-194 |
| Q94K62 Putative uncharacterized protein At4g19880 (Fragment) | 1745 | 1e-192 |
| Q2MGR6 Intracellular chloride channel | 1479 | 8e-162 |
| Q9FL95 AT5g45020/K21C13_21 | 1477 | 1e-161 |
| B9ICN7 Predicted protein | 1475 | 2e-161 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G19880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1635 Blast hits to 1635 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 158; Plants - 57; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink). | 1776 | 2e-198 |
| AT5G45020.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 907; Metazoa - 22; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | 1478 | 6e-164 |
| AT4G19880.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1621 Blast hits to 1621 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 155; Plants - 57; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). | 1366 | 5e-151 |
| AT4G19880.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1567 Blast hits to 1567 proteins in 487 species: Archae - 12; Bacteria - 899; Metazoa - 23; Fungi - 155; Plants - 55; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink). | 1361 | 2e-150 |
| AT5G44990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink). | 1327 | 2e-146 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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