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Information for unigene UN42033
| FASTA Sequence |
| Unigene ID: UN42033 | Length: 588 |
SSR | | GGAGGTTACCCCCTCTCTCTCTCTCTCCCTGTCGTCGACTCGAGTAGGTCAGTTACGTTAAAGGATCGTGCTTTGAAGAAGAAGAA
GAAGAAGAAGAGATAAGATGAGTGGGAGTGGAGACAATAAAGTTTCTGGAGGAACGACAAAGACACCTGCTGATTTCCTCAAATCC
ATCCGTGGGAGACCTGTTGTCGTCAAGATCAACTCTGGTGTTGATTATCGTGGCATCCTTGCTTGTCTTGATGGGTACATGAACAT
AGCAATGGAGCAGACAGAAGAGTATGTTAACGTGCAGCTCAAGAACAAATACGGTGATGCCTTTATCCGTGGAAACAATGTTCTTT
ACATCAGTACGGTGAACACACCTTTAGCTGACGGAGCTTAGACCCTTCCTCATGCATCATCATCAGCAGCCATGACGATCTTATAG
ATGTTACCTGCTTTGACCTCTTTCTAAAACAACTCTTGCACTTGACGATTGACATGTATCAAAGATGTTTGTTTCTCTTAAATGAT
TTTTTTTATAAGCATGGTAATAGCAGACTCATTTATGTTTACTTAAAACGCAAATTAATTTAGCTAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACU14139 unknown [Glycine max] | 398 | 6e-037 |
| NP_191540 U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana] | 392 | 3e-036 |
| XP_002534408 small nuclear ribonucleoprotein f, putative [Ricinus communis] | 392 | 3e-036 |
| AAM63434 U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] | 391 | 4e-036 |
| XP_002876525 hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp. lyrata] | 391 | 4e-036 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P62312 U6 snRNA-associated Sm-like protein LSm6 | 329 | 3e-030 |
| P62313 U6 snRNA-associated Sm-like protein LSm6 | 329 | 3e-030 |
| A8NHT8 U6 snRNA-associated Sm-like protein LSm6 | 271 | 2e-023 |
| B0DWN3 U6 snRNA-associated Sm-like protein LSm6 | 270 | 2e-023 |
| Q4PG71 U6 snRNA-associated Sm-like protein LSm6 | 254 | 2e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6SY16 Putative uncharacterized protein | 398 | 4e-037 |
| B9T839 Small nuclear ribonucleoprotein f, putative | 392 | 2e-036 |
| Q9M1Z3 Putative U6 snRNA-associated Sm protein | 392 | 2e-036 |
| Q8LCS5 U6 snRNA-associated Sm-like protein | 391 | 3e-036 |
| B4FCE3 Putative uncharacterized protein | 387 | 8e-036 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 393 | 1e-038 |
| AT2G43810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 380 | 4e-037 |
| AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 380 | 4e-037 |
| AT4G30220.1 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | 170 | 8e-013 |
| AT2G14285.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 125 | 1e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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