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Information for unigene UN42089
| FASTA Sequence |
| Unigene ID: UN42089 | Length: 718 |
SSR | | GGGGAGACTCGCGATTTGAAATCTTTGTCGTCGTCTCATCTCCATCGTCGTCGTCAGCTCCGCCAGCCATCGACGATCTCCTTCAG
CTATGTCATCGACGTTATCTTTCAGCTCGGCCATCGGCGATCTCTCTCTCTTTCTCTCTCTCTCTCTCATTCTCTTTCTCTCTCTC
TATCTCTCTCTGATTTTGAATCGGAAATGTTATCTTCTTCTTCCTTGATCTCCTATCTCTCGCTTAGAGGTTTTGACCGTTTCTGA
TTGACTGTATTTGATTGGATCGTATTTGCTGCGAAAATTCCACCGGTTTACAGGGAAGCTCATGACCTTAAGGAGAGCGAGTATGG
TTACGCTCGCAAGGTTTCAGGACCTGTCGTTGTTGCGGATGGTATGGCTGGTGCTGCCATGTATGAGTTATCTTCAAGAACGTTCC
TTTCAATCCTGGCTTCTACTCCGAAGCTTCTTTCTTCTTCAGAGGAGATAGTTAGTGGAGATAGCTCCAAGATCATCCCATGCTTG
TCGATCTCAAGAATGGAGAGACCTACAGTGGGCATTTAGTAAATTGTGATACGTGGATGAACATTTATATTCGTGAAGTAATCTGC
ACATCAAAGGACGGTGACAGGTTTTGGAGAATGCCGGAATGTTGCATCTTGAACAAGGATTGTCTAATATTTTTGTGGCGACCGCC
ACTTTCGAATATGATAAAATAATTCGAGAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198124 U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana] | 265 | 2e-021 |
| ABB02633 glycine rich protein-like [Solanum tuberosum] | 265 | 2e-021 |
| AAM65462 glycine rich protein-like [Arabidopsis thaliana] | 265 | 2e-021 |
| AAM13039 unknown protein [Arabidopsis thaliana] | 265 | 2e-021 |
| CAN75888 hypothetical protein VITISV_023640 [Vitis vinifera] | 265 | 2e-021 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43582 Probable U6 snRNA-associated Sm-like protein LSm4 | 264 | 2e-022 |
| Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4 | 262 | 3e-022 |
| Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4 | 257 | 1e-021 |
| Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 | 247 | 1e-020 |
| Q9Y4Z0 U6 snRNA-associated Sm-like protein LSm4 | 247 | 1e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5APC0 Putative uncharacterized protein | 265 | 2e-021 |
| A9RYM0 Predicted protein (Fragment) | 265 | 2e-021 |
| B9GS94 Predicted protein | 265 | 2e-021 |
| B9SAP2 Small nuclear ribonucleoprotein SM D3, putative | 265 | 2e-021 |
| C6T0A4 Putative uncharacterized protein | 265 | 2e-021 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G27720.1 emb1644 (embryo defective 1644) | 265 | 1e-023 |
| AT1G78900.1 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | 145 | 9e-010 |
| AT1G78900.2 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism | 145 | 9e-010 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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