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Information for unigene UN42121
| FASTA Sequence |
| Unigene ID: UN42121 | Length: 764 |
SSR | | GGAAAGAGAAGTAGAAAAGAAAAAGGGAACCGATTTCCAAATTTTCTCCACCTCCGTTGTCTTGGATCTCTTTCTTTCTTCTCATC
ACTTCCTCTCCCTCTAAAGTTTTCACCTTCTTTTACTGAAGAGGAAGCTCTAATCTTCTGATAGCAAGGTTTCTCTTTTAGCTTCG
ATTTGCTCTCTACGGATCTCTAAATCTTCTAATTCGAGAAGATGCTTCCTCTTTCGCTGCTCAAGACTGCTCAAGGGTATCCCATG
CTTGTGGAGCTCAAGAATGGAGAGACCTACAATGGGCATTTAGTAAATTGCGATACGTGGATGAACATTCATCTGCGTGAAGTCAT
CTGCACATCAAAGGACGGAGACAGGTTTTGGAGGATGCCCGAATGTTACATCCGCGGTAACACAATCAAGTACCTTCGAGTTCCAG
ATGAGGTGATTGATAAAGTACAGGAGGAGAAGACCCGTACAGATAGAAAACCACCGGGGGTTGGACGTGGAAGAGGACGTGGTATG
GATGATGGAGGGGGCAGAGGCCGAGGCCGAGGAGCTCCAATGGCGAAGATGACTGGCAACAGAGGAGCAGGTCGTGGCCGTGGTTG
ATACAACAACTTATATAAAAAGACTATCCAATCTCTGCTGCTGCTGCTGCTGCACTCGCATTTTAAGAGTTCTCTTGTTTGTTCTT
TTTTTCATCTTTGAGCTGAATATATAAAACTAAATCACAATGAGCCGAATATAAAAAAATTCGAAGCTGTTCTAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAM65462 glycine rich protein-like [Arabidopsis thaliana] | 669 | 4e-068 |
| NP_198124 U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana] | 668 | 5e-068 |
| AAM13039 unknown protein [Arabidopsis thaliana] | 664 | 2e-067 |
| XP_002874352 hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp. lyrata] | 632 | 8e-064 |
| XP_002523061 Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis] | 571 | 9e-057 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4 | 554 | 4e-056 |
| Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4 | 539 | 2e-054 |
| Q43582 Probable U6 snRNA-associated Sm-like protein LSm4 | 532 | 1e-053 |
| Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 | 438 | 1e-042 |
| Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 | 431 | 7e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LAC6 Glycine rich protein-like | 669 | 3e-068 |
| Q8RWJ9 Putative uncharacterized protein At5g27720 | 664 | 1e-067 |
| B9SAP2 Small nuclear ribonucleoprotein SM D3, putative | 571 | 6e-057 |
| B9GS94 Predicted protein | 566 | 2e-056 |
| B9I9S7 Predicted protein | 563 | 5e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G27720.1 emb1644 (embryo defective 1644) | 669 | 2e-070 |
| AT1G20580.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 168 | 2e-012 |
| AT3G07590.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative | 145 | 1e-009 |
| AT4G25630.1 FIB2 (FIBRILLARIN 2); snoRNA binding | 111 | 9e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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