Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN42136

FASTA Sequence
Unigene ID: UN42136Length: 779 SSR 
TTGCAGAAAAACGGAATCATTTATTTCTACCCAAAGTTCAGAAAAAAAAAACGAAAATAACATATAACGGTAATATAAGTCCGAAA
ATTCAGAGAGAGAAAAAACACAGGACTCTAACAAGTCTATTACTGACAAAGAAAATAACAACACCTGAAAAAATTGCTTCAGAAAA
AGCAAACATTCAACGGCTGAGATTTTCTCGTCAAATTTCAATCGATTTTGACAGAGGAAAACAGATAGTGGACGAAGTAAAAGGAA
GTAAGGAAGCCAATGGTTCCTGTAGAGAACATTATTGCAATGGCCATAAGCAGAGAGTAGCCAATGTAAAGCATAGCCGAGACCGG
TCCGCTCAGACTTTGGAGATCGAACCTATAGGCAGAGTTATCAATCTGATCCCCCATGAGAAGCTCCCCAAGATTCTCAGCACTTT
TCTTGATGCCCTCGAGTGGTTTGCAGTAAGGAAGGCTATAGAAACTGAAAGGTAGCTCGGTTTCTATAGACGTCAAGGAATTGGCT
TTGGCCAAGATTGAGTCTCCGTTTGAATATGTGTGCATATAACTCCCTGGCAAGTAGAACCCATTGCAAAGCTGACCAACAAACAC
CAGCAAAACCAAAACCCGGTACATTTTCCTTCCTGACGCAGATCCAGGTTCTGAGATCTTCAACGAAGTCAGATCTAGGGGCAAGA
GACGGATTTCTTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTATATCTATCTATCCCTAGCCTTGCTTAGAGCG
TTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB40983 putative protein (fragment) [Arabidopsis thaliana]4222e-039
NP_193002 endomembrane family protein 70 [Arabidopsis thaliana]4222e-039
XP_002302834 predicted protein [Populus trichocarpa]3631e-032
CBI28494 unnamed protein product [Vitis vinifera]3594e-032
EAZ07484 hypothetical protein OsI_29743 [Oryza sativa Indica Group]3352e-029

Swiss-Prot top hits (Blast detail)Scoree value
Q55FP0 Putative phagocytic receptor 1a1971e-014
Q8BH24 Transmembrane 9 superfamily member 41621e-010
Q4KLL4 Transmembrane 9 superfamily member 41575e-010
A5D7E2 Transmembrane 9 superfamily member 41558e-010
Q92544 Transmembrane 9 superfamily member 41558e-010

TrEMBL top hits (Blast detail)Scoree value
Q9SU20 Putative uncharacterized protein T20K18.10 (Fragment)4221e-039
B9GTF3 Predicted protein3639e-033
A2YWM3 Putative uncharacterized protein3352e-029
A3BUG8 Putative uncharacterized protein3352e-029
C0HHS2 Putative uncharacterized protein3342e-029

Arabidopsis top hits (Blast detail)Scoree value
AT4G12650.1 LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35160.1); Has 983 Blast hits to 980 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 434; Fungi - 144; Plants - 228; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).4228e-042
AT2G24170.1 endomembrane protein 70, putative2184e-018
AT5G35160.1 LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12650.1); Has 1053 Blast hits to 1004 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 478; Fungi - 143; Plants - 250; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).2175e-018
AT5G25100.1 endomembrane protein 70, putative2069e-017
AT5G10840.1 endomembrane protein 70, putative2051e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information