Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN42153

FASTA Sequence
Unigene ID: UN42153Length: 1086 SSR 
ATGTAAGTTAACTCTTCAAGATTAGTATTACAGTAAACAAAATAGAAGCTAAAGAGTATTTTTTTTCACACAAATCTTATTGAGAC
AAATCTCAAGCAATTCACAAGGAAGATCCTCAAATAGAACAATACTATTACCTTCCTACATAGATAAAGAAAGACAGATGATTCCC
AAAACCATTATACTGTATCTACATGGAGCCGGACAAGTTTCATGTGACAATCTCCCTGACGAGCCAGTCAAGACAAGGATACGCAA
AGTAGAGGATGAGAAACGACGGTAGAGCCAGTAAGAGAGTGACTAGAATGTACATAACCAAAATGGCTGCACAGATAGGTACTGCG
TAGAGTATTATCAGCAGGCACATGACAACCAACGGGAACTTTGCTGCCAACTGAACAAAGAAAACCAGAGACTTCCTCAGTGATGT
CTGCACGTTGTCCCTATGATGACGGTGGTGGAGACATGTAGGAGGAGGAGGAGGCTCTCTTTGATGATCATCCGTTTGAGAAGTGC
GTCTCTCGCCGTTCATCCTCTCGACCTCCAGAGCAAAAAGTAGTTCTTATGAGGGAACCTGAGGGCTCCTTTGAAGACGAGACGGA
AGGAGAGTTTATTGCACCAGGGGGAGGAGATGAAGAGAGGGAGCTGGACCGGGTGTGTGGGTAGCTTCACGATAGCCCACTGAAGG
CCCAAGATGCAGTTCTTGCACATGGTGTGGCCGCACCATAGCACGTAGGGAACGTTCTCGACAATGTTGAATGACTCCCAGCAAAT
GGGACACTCGAGACCTTCTTCCTCTTTGCTGCTTCCTACAGAAGAGGATTCGTCATCAGAACATTCATCATGAGCATGGACATCAT
GGACTGGTCTTCTTGTTTCGTGGTGTTTCGGTCCGGTGAGATAGCTGGAGGCTAGGTTCCACATCCTGGTATCAGGGATGGATAAC
ATGAATGCCTTGTTCTAACAGATAAAGCCACAACAGATTCTACTAACGGCCTGCCTTGATGGAGCTCACTGAAAGTGTGTCATAAC
GTAAACCCGATTCTATCCGACGAGGTTCTGCGCACGCAGCAGCGAAAGTCTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_189573 RING/U-box domain-containing protein [Arabidopsis thaliana]6024e-060
XP_002875506 hypothetical protein ARALYDRAFT_484697 [Arabidopsis lyrata subsp. lyrata]5569e-055
BAB03123 RING zinc finger protein-like [Arabidopsis thaliana]5532e-054
ACJ85427 unknown [Medicago truncatula]4752e-045
ACU22714 unknown [Glycine max]4734e-045

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q84JZ7 At3g292706023e-060
Q9LHJ7 RING zinc finger protein-like5531e-054
B7FKZ3 Putative uncharacterized protein4752e-045
C6TIH4 Putative uncharacterized protein4733e-045
B3VZ59 Expressed protein (Fragment)4652e-044

Arabidopsis top hits (Blast detail)Scoree value
AT3G29270.1 ubiquitin-protein ligase6155e-064
AT3G29270.2 ubiquitin-protein ligase6155e-064
AT1G69330.1 zinc finger (C3HC4-type RING finger) family protein4112e-040
AT1G74370.1 zinc finger (C3HC4-type RING finger) family protein3476e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information