RadishBase

| | | |

Information for unigene UN42222

FASTA Sequence

Unigene ID: UN42222	Length: 349	SSR
GGAATCACAAGTCTCTTTCTCACATCATCCTTTGATTTCTCCAACAAAAAAAAAGAAAAAAATGTCTGCAGAAGTTGAGTACCGGT GGATATGGTGGTGGTGGTGGCAGACGTGATGGAGGTGGTTACGGAGGTGGTGATGGTGGTTATGGAGGAAGCGGCGGAGGTGGCGG TGGCTGGTAATCAACCATTAAGGGGTCGGGTTGTTGTCTGCTTGTCTGTTTTCGCTTTAGATTTGGTTCCGTCTGGTTTGGTTTGG TTGTCTGGTTTGGTTCTTGTTCACTTTTTTGCTGTAACAGATCGTTTATGTCTTGTTTGCCTAAAACGAAATGTTAATTCGCATGT TCGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
Q05966 RecName: Full=Glycine-rich RNA-binding protein 10	174	3e-011
ZP_06799564 hypothetical protein Mtub2_04996 [Mycobacterium tuberculosis 210]	166	2e-010
ACJ04160 putative glycine-rich RNA-binding protein [Chorispora bungeana]	159	1e-009
XP_002945770 pathogenesis-related protein 1-like protein [Volvox carteri f. nagariensis]	158	2e-009
1604369A sulfated surface glycoprotein SSG185	156	3e-009

Swiss-Prot top hits (Blast detail)	Score	e value
Q05966 Glycine-rich RNA-binding protein 10	174	9e-013
P21997 Sulfated surface glycoprotein 185	156	1e-010
P12978 Epstein-Barr nuclear antigen 2	149	7e-010
P21260 Uncharacterized proline-rich protein (Fragment)	141	6e-009

TrEMBL top hits (Blast detail)	Score	e value
B6VA25 Putative glycine-rich RNA-binding protein	159	9e-010
A0D550 Chromosome undetermined scaffold_38, whole genome shotgun sequence	155	3e-009
B9FFB2 Putative uncharacterized protein	152	6e-009
D5VPA7 OmpA/MotB domain protein	152	6e-009
B4JJI1 GH12253	151	8e-009

Arabidopsis top hits (Blast detail)	Score	e value
AT1G49750.1 leucine-rich repeat family protein	141	5e-010
AT4G13340.1 leucine-rich repeat family protein / extensin family protein	140	6e-010
AT3G22800.1 leucine-rich repeat family protein / extensin family protein	136	2e-009
AT4G38680.1 GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding	136	2e-009
AT4G39260.1 GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding	133	4e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			100%

Unigene Members	Member information