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Information for unigene UN42239
| FASTA Sequence |
| Unigene ID: UN42239 | Length: 729 |
SSR | | GATGGGCAAAACTTAGGATGTTATCAAATAGTTTTCAGAATAGAACACAGATACTCTAGCAGCAGAGTTTTACTAAGAAAAAGAAA
CAGAATACAGGGTCCATTATGTTGTGGATCATCCCCTCCTATTCGTCGTCATCCTCACTCTTTGACTTCTTCTTCTTCTTCGATTT
CTTCTTGCTCTGACCACCATCATCAGTCTCTTCCTCTCCTCCAAGTTGAGATTTTTCCAGATCACCAGGCTTGAGGTCCTTGATGA
ACCTGTCAAAATGAAGGCGAACACCACGGAGAAGCTCAAGAACAAACTCATTGCTCTGGCAGGGGATTTTAGTGGCTTCCAAGATA
TGGGAACCGAGTTTAGGCTCAGAGGTTCCTAAGCTGAACTTGGGCTTCTTGCCTTCTTTAACTTTAGGAAGATTCAACTCCAGGAA
ACTTCTAAGCTCGTCAGTCATAACCCCTTCAGAGACAGCGTTAACTTGGTTGAGGGCATCGAGCGCAGACTCGAAGGGATGAAAAG
CCGTGAGCTGGACAACACGACCAAATCGACTGAGGTCGGTGACTGAGCTCCGGACGGCCTCGGTGTTCTGTCCGATCTCATCAAGA
CCGTGGGCCTCGAAGAGGCCATAGCCAGAAGAAGACTCGTAGAGAAGATACATAGCCATTCTGAGAGAGGAGAGACAAAAGCTAAA
ACCTTAAAAATGAACGAATTATTGATTTCCCAACTCACTCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_176007 homolog of nucleolar protein NOP56 [Arabidopsis thaliana] | 724 | 2e-074 |
| BAH20197 AT1G56110 [Arabidopsis thaliana] | 715 | 2e-073 |
| XP_002894559 hypothetical protein ARALYDRAFT_474678 [Arabidopsis lyrata subsp. lyrata] | 709 | 8e-073 |
| XP_002882791 hypothetical protein ARALYDRAFT_478647 [Arabidopsis lyrata subsp. lyrata] | 692 | 8e-071 |
| XP_002283518 PREDICTED: hypothetical protein [Vitis vinifera] | 691 | 1e-070 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O94514 Nucleolar protein 56 | 364 | 4e-034 |
| Q12460 Nucleolar protein 56 | 285 | 6e-025 |
| Q95K50 Nucleolar protein 56 | 265 | 1e-022 |
| O00567 Nucleolar protein 56 | 264 | 2e-022 |
| Q5RA29 Nucleolar protein 56 | 262 | 3e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SGT7 At1g56110/T6H22_9 | 724 | 1e-074 |
| B9DHI0 AT1G56110 protein (Fragment) | 715 | 1e-073 |
| Q0WVV7 Putative nucleolar protein (Fragment) | 671 | 1e-068 |
| Q9LTV0 Nucleolar protein | 671 | 1e-068 |
| B9IF81 Predicted protein (Fragment) | 669 | 3e-068 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 724 | 7e-077 |
| AT3G12860.1 nucleolar protein Nop56, putative | 671 | 9e-071 |
| AT3G05060.1 SAR DNA-binding protein, putative | 150 | 2e-010 |
| AT5G27120.1 SAR DNA-binding protein, putative | 143 | 2e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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