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Information for unigene UN42260

FASTA Sequence
Unigene ID: UN42260Length: 716 SSR 
GGGTCTTTACCTTTTGATCCTTCTTCTTCTTCTTCTTCTCCGCTAGGTTTCTCTCAAACGAACAGATCCTCCATTTGTCTCAAAGT
TACCTTGTGCGATGAAGACAGCTAAGGGGAAAGGTAAAGCTAAGACCACTAAGGAAGCCTTGAAGCCAGTTGATGACAGAAAGGTG
GGGAAGAGGAAGGCACCGGCTGAGAAGCCTAGCAAGAGGGAGACTCGTAGAGAGAAGAAAGCCAAGAAGGACCCCAACAAACCCAA
GAGAGCTCCTAGTGCTTTCTTTGTCTTCTTAGAAGATTTTAGGCAAACGTTCAAGAAAGAGAATCCAGATGTGAAGGCTGTTTCTG
CTGTTGGGAAAGCAGGAGGACAGAAATGGAGGTCAATGTCTCAGGCTGAAAAAGCTCCATATGAAGAGAAAGCTGCAGAGGAAAGG
CAGGTGAGGATGACGATGATGATGATGATGAAGATGACGATGATGATGATGATGATGAAGATGACGAGGAAGAAGACTAAACTGGA
GATAGAGATCAGAGTTTGGATCTCGCGGATAAGTACAGGTTCAGAAGGCAGAAGTCAGTATATTTTGTATTTTGTGTGTTGGCAAC
TATAGATCGAAATGGTGTGTTGTGCTTTTTTTTCTTTTCCTAAGAAAGCCAAACAGTTTCTTAGCGGTTCATGTAAGTTTATTTCA
GCTTTCTATCCACAACGTACACTGTACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190756 high mobility group protein B1 [Arabidopsis thaliana]5252e-051
NP_974413 high mobility group protein B1 [Arabidopsis thaliana]5252e-051
NP_001190062 high mobility group protein B1 [Arabidopsis thaliana]5252e-051
XP_002877829 hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp. lyrata]5172e-050
BAJ33790 unnamed protein product [Thellungiella halophila]5117e-050

Swiss-Prot top hits (Blast detail)Scoree value
P40619 HMG1/2-like protein2623e-022
P27347 DNA-binding protein MNB1B2588e-022
P26585 HMG1/2-like protein2542e-021
P40621 HMG1/2-like protein2515e-021
P40620 HMG1/2-like protein2434e-020

TrEMBL top hits (Blast detail)Scoree value
O49595 At3g51880/ORF135251e-051
Q3EAL6 AT3G51880 protein5251e-051
A5BH86 Putative uncharacterized protein4264e-040
C6SVP1 Putative uncharacterized protein4192e-039
C6SXC8 Putative uncharacterized protein4192e-039

Arabidopsis top hits (Blast detail)Scoree value
AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5258e-054
AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5258e-054
AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor5258e-054
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor2515e-022
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor2515e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information