Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN42308

FASTA Sequence
Unigene ID: UN42308Length: 1103 SSR 
GGATTGTATCTTCTCTTCTCCCTATCACACTACACAACATATCATGGCTTTCTCCACTAGAAACTTCATCTTCTTCTTCTTCACAA
CACTTGTTCTTCTCTCCACTCAAATCAATGCAAGAGACAGCTACTTCTTTGGAAAATTCCACCGAGAAATCCCCAAAGACCAAAAC
TCTAACAATGTCCTCTCTCCTGAGACCAGCGAGAAAACCACAGTAGAAGAATCCTTCCCTAACAAGAAAGAGCAAGAACTAGATCC
AACCTTCCTCCCCGAGTCCGAAAATGGTTATGGCTTGTATGGTCACGAGACCACCTACAACAACAACAAAGAAGAGTTCAACAACA
ACAACAAAAAGTACGATGAAAAATTCAACAGCGAGAATTTCTCCACTCCAAGTTTGAGCGAGACCAAAGAGTCATACAACAACTAT
GACGCAAAGTACCCAAAGAAGACGGAGAGTTACGACAATAACCGTTACAACAACGAAGAGTTCAACAACAACAAGTACGATGAAAA
CGTCAATGAGGAGTCATACTCCGAGAACAATGAAGACAAGAGAAGCTTCTATAACTCCAACGCTTACGGGACGGAGTTAGAACGTG
AAACGCCGTACAAAGGTTACGGCCACAATTTGGAGAGACAAGGCATGAGTGACAAAAGATTCATGGGAGAAGGGTAACTACTACTA
CGACCTTTACAACGATAGAAACCATGGCCATTTCCACCGGAAACCTCATCAGAAAAGCCCTAACGGTTATTATTTTTTTCCGGCGA
CCGATAATAGCTACGATCAGTCATATTCCTACGGAAACAACAACTACAACAGCGAGGAGGAGAAGACCTTCAAGGATCCGTACAAT
TCCAAGTGGGAGAAGAACATGATGAACGGACAGCCCGAGGGGTTTGTTGAGGAACAAGGAGATCAGTTCAAGCCTTGATGAAAATT
TGTAGTATTTGATTTCCTCTCGAGATCTACACTCTTATTGGTGATTTTCGCTTATTTCAACTAAGTTTATTTTACTTATGGTTGAT
TAGTCAAAGTAAATCTTTGTTATCATTACCATAAATCGAAAGAGAAAGGGGTTTTTGTGTGTGTGTGTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893529 hypothetical protein ARALYDRAFT_473059 [Arabidopsis lyrata subsp. lyrata]6804e-069
NP_174162 uncharacterized protein [Arabidopsis thaliana]6544e-066
XP_002881311 hypothetical protein ARALYDRAFT_482341 [Arabidopsis lyrata subsp. lyrata]5263e-051
NP_565775 uncharacterized protein [Arabidopsis thaliana]3391e-029
AAM60840 unknown [Arabidopsis thaliana]3391e-029

Swiss-Prot top hits (Blast detail)Scoree value
Q54MI9 Rho GTPase-activating protein gacK1586e-010
Q54DA1 Dr1-associated corepressor homolog1471e-008
Q05049 Integumentary mucin C.1 (Fragment)1452e-008
Q1ZXA9 Uncharacterized protein DDB_G02921861407e-008
Q54G21 FK506-binding protein 51399e-008

TrEMBL top hits (Blast detail)Scoree value
Q9SGN8 F3M18.166543e-066
P93019 Expressed protein3391e-029
Q8LGJ1 Putative uncharacterized protein3391e-029
Q39360 Brassica napus (clone PIS63-1)3202e-027
Q39361 Putative uncharacterized protein3148e-027

Arabidopsis top hits (Blast detail)Scoree value
AT1G28400.1 unknown protein8243e-088
AT2G33850.1 unknown protein5287e-054

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  33%
 
102  67%

Unigene MembersMember information