 |
Information for unigene UN42315
| FASTA Sequence |
| Unigene ID: UN42315 | Length: 926 |
SSR | | GGAATAATGGCCAGCAGATTGCCATGGGATCCATGCAACAAAATACTCCTCAACAAGTAAATAACAGTTCTGTATCTACTCAAAGT
GGGTTAAGTACACTGCAGTCTAATGTTAATCAAACCCAGTTAAGTTCTAGTTTGCTTCAGCAACAACACATGAAGCAACAGCAAGA
CCAACAAATGACGCAGCAGTTCAAACAGCAGTTGCAACAGCGTCAGATGCAGCAGCAGCAGCAGCTGCTACAGAAGCAGCAGATAA
TTCAGCAACAGCTGCAAGCAAGACAGCAAGGGGCGCAAAATGATATGAATGATTCGACAGCGAGGCAGGGAATGAATGTCGGCCGT
GGGATGTTTCAGCAACATTCTCTGCAGGGTCAGCGTGCTAATTATCCCCTTCAACAGTTAAAACCAGGATCCCAGCTTCCTGTTAC
GTCGCCTCAACTTATGCAAGGTGCATCTCCTCAGATGATACAACAACATATGTCTCCTCAGATCGACCAGAAAAATGTGATGTCAT
CTGTCAACAAGATGGGAACTCCATTGCAGCCTGCAAACTCCCCTTTTATTGTCCCATCTCCTTCAACCCCCTTGGCACCGTCCCCT
ATGCAAGTTGACTCTGAGAAACCTTCTGGAGCTTCTTCGTTGTCAATGGGAAATACTGCACGCCAACAAGCAACTGGCATGCAAGG
TGTAGTTCAGTCCCTTGCAATTGGCACTCCAGGGATCTCTGCCTCTCCTCTCCTTCAGGAGTTTGATGGAAATAATTTAAATCCTT
TGATAAGTACATCTGGAAAACCAAGTGGGACTGAGTTGCCTATGGAACGCCTTATTAGAGTCGTGAAGTCCATCTCACTACAAGCA
CTTTCTTCTGCAGTAAGCGACATCGGATCTGTTGTAAGCATGGTTGATAGGATAGCTGGCTCAGCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892882 hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata] | 1238 | 6e-134 |
| NP_173030 uncharacterized protein [Arabidopsis thaliana] | 1173 | 2e-126 |
| AAF82148 EST gb|N38213 comes from this gene [Arabidopsis thaliana] | 1173 | 2e-126 |
| XP_002530460 transcription cofactor, putative [Ricinus communis] | 728 | 8e-075 |
| AAN62354 CTV.22 [Citrus trifoliata] | 701 | 1e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q86AF2 Putative uncharacterized protein DDB_G0271606 | 204 | 2e-015 |
| Q54VY3 Putative uncharacterized protein DDB_G0280065 | 192 | 5e-014 |
| Q552X2 Putative mediator of RNA polymerase II transcription subunit 26 | 190 | 9e-014 |
| Q55F68 Adenylate cyclase, terminal-differentiation specific | 188 | 2e-013 |
| Q75BI6 Mediator of RNA polymerase II transcription subunit 15 | 182 | 8e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LMQ6 F7H2.12 protein | 1173 | 1e-126 |
| B9SWU1 Transcription cofactor, putative | 728 | 6e-075 |
| Q8H6Q7 CTV.22 | 701 | 8e-072 |
| B9GFA4 Predicted protein | 695 | 4e-071 |
| B9MWL5 Predicted protein | 643 | 4e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G15780.1 unknown protein | 1173 | 8e-129 |
| AT1G15770.1 unknown protein | 287 | 5e-026 |
| AT5G20730.1 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator | 172 | 1e-012 |
| AT5G20730.2 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator | 172 | 1e-012 |
| AT5G20730.3 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator | 172 | 1e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
