RadishBase

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Information for unigene UN42344

FASTA Sequence

Unigene ID: UN42344	Length: 694	SSR
TTTTTCATCCTCATCATCATCGCTCAGACACACAAAGGAGAGAGAGAGAGAGAGAAAAATGGAGATTGGGTTTCTGGGCTTGGGTA TCATGGGAAAGGCCATGTCAATGAATCTACTGAAACATGGTTTCAAGCTAACCGTCTGGAACAGGACACTCTCCAAGTGTGATGAA CTTGTGGAGCATGGAGCTTCAGTATGCGAGACTCCAGCTGAAGTAATCAAGAAATGCAAATACACTATCGCTATGCTCTCTGACCC TTCCGCTGCTCTTTCGGTTGTTTTCGATAAAGATGGCGTTTTGGAGCAAATCTGTGAAGGGAAAGGCTATATCGATATGTCAACTG TTGATGCTGAGACCTCGTTATAGATCAACGAGGCAATCACCGGGAAAGGTGGTCGGTTTGTAGAAGGTCCGGTTTCAGGTAGCAAG AAGCCGGCAGAAGATGGCTAGCTCTTGCTCTTGGCGATGAAAACGCTGTTTCCATGCCTGTAGCTGCAGCCGCAAATGAGGCTTTT AAGAAGGCAAGAAGCATGGGACTTGGAGATCTGGACTTCTCTGCTGTGATTGAGGCTGTGAAATTCTCCAGGGAGTAGTAGTTAAA CTATTGGAAAAGAAAAAACTAAAATGATTGTTGTCTTCCCAAAGACAGTTTACTCTACTCATGATTTGGCCAAGAACACATTTTAA TCCTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566768 glyoxylate reductase 1 [Arabidopsis thaliana]	648	9e-066
AAK83640 AT3g25530/MWL2_15 [Arabidopsis thaliana]	648	9e-066
AAK94781 gamma hydroxybutyrate dehydrogenase [Arabidopsis thaliana]	648	9e-066
3DOJ Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1)	648	9e-066
XP_002885728 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]	647	1e-065

Swiss-Prot top hits (Blast detail)	Score	e value
A4FUF0 Putative oxidoreductase GLYR1	351	1e-032
Q5ZLS7 Putative oxidoreductase GLYR1	351	1e-032
Q49A26 Putative oxidoreductase GLYR1	351	1e-032
Q5RKH0 Putative oxidoreductase GLYR1	351	1e-032
Q5RKN4 Putative oxidoreductase GLYR1	348	3e-032

TrEMBL top hits (Blast detail)	Score	e value
Q94A74 AT3g25530/MWL2_15	648	6e-066
Q94B07 Gamma hydroxybutyrate dehydrogenase	648	6e-066
Q9LSV0 At3g25530	648	6e-066
B7FJX0 Putative uncharacterized protein	577	1e-057
B1Q3F6 Succinic semialdehyde reductase isofom1	572	4e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT3G25530.1 GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)	648	4e-068
AT1G17650.1 GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating)	364	3e-035
AT3G25530.2 GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating)	356	3e-034
AT4G29120.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	198	6e-016
AT1G71180.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	157	4e-011

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

Unigene Members	Member information