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Information for unigene UN42427
| FASTA Sequence |
| Unigene ID: UN42427 | Length: 934 |
SSR | | GGGCTCAAAGATCCAGCAGAACCCTTATCCCCTCCCGAAAGCACATCGAGAAAGAGAGAGATAGAGAGAGAGAGAGCCATGTCTGC
CTCCGCTTCTTCCGTTTCCCTCTCTTCCTTCAATCCCAAATCCCTTCACTCTCCTTCAAACTCCCCTCCCTCTCTCTCTTCGCTTC
CTCCGCCCTCAAATCCTCCTCCTCACCCGCCCAGTACACATCTCTCTTCGTCACACACGTCGCCGTATCCTCTGATTTCGAGGTTG
AGGAAGACGACATGTTCGCTGACAACGATTCTCCGCTGGCCCTCCTCCACCTAAGAGGGAGGAATCATTCTCCATAGGACCAAGGA
GTGGTGGTTACGGTTCTGAGCGTTCCGGTTACGGTTCTGAACGTTCTGGTTACGGGTCTCAACGTTCAGGACGTTCTGGCTACGGT
TCTGAGCGTTCTAGCTACGGTTCTGGGTCAGGGTCGGGCTCGGGCTCATCAGACCGTGTTTATGTGGGTAACCTTTCGTGGGGTGT
GGATGACATGGTTCTTGAGAGCTTGTTTAGTGAGCAAGGAAAGGTTGTAGAGGCCAGGGTCATTTACGACAGGGAAACTGGTCGAT
CCAAGGGTTTTGGGTTCGTCACACTCGGTTCTCCTCAAGAGGTCACAAGAGCCATCAGTTCTTTGAATGGAGCTGATTTGGATGGA
AGACAGATTAGAGTCTCGGAGGCGGAGGCTGGACCACCAAGGCGCCAATTTTGAGTTACCACGCAACTCCTGGAATCTATGAGGTT
TAGCTCATCTTGACTGGAGATGAGTTATTTATGTTTTGGGCTTATGTTTCTTTATTTTACTTTAATTCGTTTTACGCTTTGAATGT
TTTGCGTTTATCTTTGTAGACTAGGAGTTTGGACCTTGTTTTCTTTTTGTATACTAGTACTCCCTTTCTTTCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 538 | 9e-053 |
| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 529 | 1e-051 |
| BAA06519 RNA-binding protein cp29 [Arabidopsis thaliana] | 529 | 1e-051 |
| NP_190914 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 527 | 2e-051 |
| NP_001190079 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 527 | 2e-051 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 527 | 8e-053 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 446 | 2e-043 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 355 | 7e-033 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 354 | 9e-033 |
| P49313 30 kDa ribonucleoprotein, chloroplastic | 345 | 1e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q7GA50 Putative RNA-binding protein | 446 | 3e-042 |
| Q8L941 Putative RNA-binding protein | 446 | 3e-042 |
| Q8W214 Single-stranded DNA binding protein | 341 | 4e-030 |
| C5WYM4 Putative uncharacterized protein Sb01g034120 | 339 | 7e-030 |
| B6T531 Ribonucleoprotein A | 336 | 2e-029 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 528 | 5e-054 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 528 | 5e-054 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 447 | 1e-044 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 286 | 6e-026 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 238 | 2e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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