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Information for unigene UN42453

FASTA Sequence
Unigene ID: UN42453Length: 716 SSR 
GGGCGTCTTCGCTCTCCTTCTTCCGCGACTTCGTTTACCTTCAGTTTCTCTATTGCCAAACCTTCATTTTCTCCTTCTCTTCTTCG
CCTGAGTTCACTCCTTACAGACGAAATTGGACAGAGCCTTACGTACAGACGAAATCGGACAGAGTTCGGATCGATAACACGGAGTC
GTACGAATTACTTCGTCGGCCACATGTTTCATGCAGAGAATCATAAGACGAGAAGATTCCCAGAGAGAGAGAGGTTCTTTTACAAC
GTATGTGAGTCCCTTCTCTCTCTCTCTGTAAACCCTAACCGCAAGAACGATGCCAGGTCCCTGAAACGAGCTCTCGATCTCGTCTC
CCCTGTCCATGGCCAATTCCCTCCTCCTGATGCTGAAGCATTGCATTCCAAGGTGGACGAGGACGAGAAGAATCTCGTTACCAAAC
CCGCCGTCGTCAAGGGCGTTCTCCTTCAGCAGACTCTTCAGGCCATCGTCTCCGTTATTCTCTTCAAGCTCAGAGAGCAGAAAAGA
AAAGCAGTAGTTTTAATGGAGATGAGGACTTCAGGAGGAGTAACCAGTGCTCCTTGAGTTATCGTGAGTTTCACTTCTTGTTCTTA
GGAACCTCGTTTTTGCTCCGAAAGTTACACATCCTTTGTTGTTTAGGATGATAGGTCTGAAAATTTCAGATAAACTCTTGAGTAGG
AAATTATAAACTTCATACAGGAACAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892798 hypothetical protein ARALYDRAFT_888804 [Arabidopsis lyrata subsp. lyrata]1757e-011
NP_563944 sphingoid base hydroxylase 2 [Arabidopsis thaliana]1712e-010
AAF43928 Contains similarity to acid phosphatase from Lupinus albus gb|AB023385 and contains a Sterol desaturase PF|01598 domain. EST gb|AI995340 comes from this gene [Arabidopsis thaliana]1712e-010
XP_002522423 sur2 hydroxylase/desaturase, putative [Ricinus communis]1408e-007
XP_002890629 hypothetical protein ARALYDRAFT_890035 [Arabidopsis lyrata subsp. lyrata]1408e-007

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9AST3 At1g14290/F14L17_41711e-010
Q9M9T3 F14L17.5 protein1711e-010
B9S8V4 Sur2 hydroxylase/desaturase, putative1405e-007
C6TGK6 Putative uncharacterized protein (Fragment)1371e-006
Q8VYI1 At1g69640/F24J1.221362e-006

Arabidopsis top hits (Blast detail)Scoree value
AT1G14290.1 SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase1719e-013
AT1G69640.1 SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase1361e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information