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Information for unigene UN42455

FASTA Sequence
Unigene ID: UN42455Length: 966 SSR 
GGATCGCTTGATTGGGAATTAGGGATTGGGGGAGGCGAGAGAGAGAGAGAGAGGTTCATTTCGATTTCTCTTCGAAAAATTAAAAT
AATCCAGAGGGGGTGGAGGTGGAGAGATGGTGAGGATGGTGAGAAGCTGCTTACAGTCGATGATGAAGCTTGTGAATTCCCTTCTT
GGAATGGTTGGTGTCGCCATGATCCTCTACTCTGTTTGGCTCATCAGGCAATGGCAACAACAAACCGGATCTCTCCCCTTCCCTTA
CCCTCATGATGATTACCCCCTTCCTTGGTTCATTTATGCTTTTCTTTGTCTCGGGGCTCTTCTCTGTCTTGTCACTTGCGCTGGCC
ACATCGCTGCTGAAACCGTTAATTCTTGTTGTCTTTACTTTTATATGGGATTCATCCTCTTGCTTATTATGATTCAAGGTGGTGTC
GTTGCCGATACCTTTCTTAACCCTGACTGGAAACAGGACTTTCCAGATGATCCAAGTGGTGCCTTCATCCGTTTCTCTAAGTTCGT
TGAGTCAAACTTCAAGATTTGCAGATGGATTGGTCTCTCCATTTTCTTTGTCCAGGGTGCATCAGTTCTATTGGCCATGTTGCTCA
AAGCTCTTGGACCTCACCCGCATTATGACAGTGACGATGAATATGATTTGAGCACGGTTTCACTCCTACATGATGCTCGCCAGCCT
CATCGTCCATACGTTGTTGGAGAACCCATTTATGGACCCAAACCGGATTCCTGGACTGTTAGATTAATGAAAGAGCCAACCGGTAA
GAGAGATGGAGTCCAAGAGAAAGCTATGAGAAGCAAAGTAGCCAATAGTCACCTCTTTTAGTATATATTACTTGCTTTGCTTCTTT
GTTGCATCTATTTATCTATCTATCTCTCACTCCAAAGTCCAACAAAACCACTATGTCTTGTAAAAAAAATATTGCACACACATATG
GGGATGTACTTATGCATTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179667 Tetraspanin family protein [Arabidopsis thaliana]9124e-096
XP_002884219 hypothetical protein ARALYDRAFT_480909 [Arabidopsis lyrata subsp. lyrata]8784e-092
NP_973493 Tetraspanin family protein [Arabidopsis thaliana]7305e-075
XP_002517938 conserved hypothetical protein [Ricinus communis]6902e-070
XP_002319358 predicted protein [Populus trichocarpa]6803e-069

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q940P5 At2g20740/F5H14.299123e-096
Q3E7P8 Putative uncharacterized protein At2g20740.27304e-075
B9RW19 Putative uncharacterized protein6902e-070
B9I5J1 Predicted protein6802e-069
B9N2B9 Predicted protein (Fragment)6731e-068

Arabidopsis top hits (Blast detail)Scoree value
AT2G20740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 91 Blast hits to 91 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).9211e-099
AT2G20740.2 unknown protein7312e-077
AT2G20740.3 unknown protein5294e-054
AT2G20230.1 LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3063e-028
AT4G28770.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20230.1); Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2931e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
113  43%
 
101  14%
 
121  14%
 
92  29%

Unigene MembersMember information