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Information for unigene UN42477
| FASTA Sequence |
| Unigene ID: UN42477 | Length: 954 |
SSR | | TTTTTTCTGCTGCTACATTATACACACACTTCTTCTCTCTCTCTCTCTCTCTCTGTGGTAGCCATGGCTTCGGCTACTTTCTCTGT
GGCCAAACCATCTCTTCAGGGTTTCTCTGACTTCTCAGGACTCAGAAACTCCTCTGCTCTTCCCTTGGGCAAGAAAACTTCTTCTG
ATGAGTTTGTTTCCTTCGTCAGTTTCCAGACTTCTGCAATGGGAAGCAGTGGAGGATACAGGAAAGGAGTGACCGAGGCCAAGCTA
AAGGTAGCCATCAATGGATTCGGTAGGATCGGTAGGAACTTCTTGAGATGTTGGCATGGTCGTAAAGACTCTCCTCTTGATGTCAT
TGCCATTAACGACACTGGCGGTGTTAAACAAGCGACGCATCTCCTCAAATACGACTCAACTCTTGGAATCTTCGATGCTGACGTCA
AGCCTTCAGGAGACTCTGCTCTCTCTGTTGATGGAAAGATCATCAAGATTGTCTCTGACCGCAACCCATCCAACCTCCCCTGGGGG
GAACTAGGCATTGACTTGGTCGTGCAGGTCTCGAAGAAGACTTTCGCTGAGGAAGTCAACGCTGCCTTCAGGGATGCGGCTGAGAA
AGAGCTTAAAGGTATACTCGATGTCTGCGACGAGCCTCTTGTCTCTGTCGACTTCAGGTGCTCTGACGTGTCGTCCACGATTGATT
CTTCTCTGACCATGGTTATGGGAGATGATATGGTTAAAGTGATTGCTTGGTATGATAACGAATGGGGTTACTCGCAGAGAGTCGTT
GATTTGGCTGACATTGTTGCCAATAACTGGAAGTGAAAAAGACTCAACTGTTTGATGTTGTTCTGCTCCATTTTTTATTTTACTGT
TATTATTATGATTCGGAATGTATAATTGTAGTTCCTGAGTTTATATGTATTTGTGCTCTTCAAAATTTAATAGTAATAAACTCTAT
ATTCGGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ10475 glyceraldehyde-3-phosphate dehydrogenase [Brassica rapa subsp. chinensis] | 801 | 3e-083 |
| XP_002892719 GAPA-2 [Arabidopsis lyrata subsp. lyrata] | 777 | 2e-080 |
| NP_172750 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [Arabidopsis thaliana] | 769 | 2e-079 |
| BAJ34149 unnamed protein product [Thellungiella halophila] | 731 | 4e-075 |
| AEH04452 glyceraldehyde-3-phosphate dehydrogenase [Arachis hypogaea] | 678 | 5e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P25856 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 672 | 1e-069 |
| P12858 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 628 | 2e-064 |
| P09315 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 617 | 3e-063 |
| P19866 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 597 | 6e-061 |
| P09043 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) | 593 | 2e-060 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LPW0 At1g12900 | 769 | 1e-079 |
| B9RGT1 Glyceraldehyde 3-phosphate dehydrogenase, putative | 659 | 6e-067 |
| A9PIN0 Putative uncharacterized protein | 651 | 5e-066 |
| A9PK22 Putative uncharacterized protein | 651 | 5e-066 |
| A9PF03 Putative uncharacterized protein | 644 | 3e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G12900.1 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 769 | 6e-082 |
| AT3G26650.1 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding | 672 | 1e-070 |
| AT1G12900.3 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 553 | 7e-057 |
| AT1G12900.2 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase | 483 | 9e-049 |
| AT1G42970.1 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase | 408 | 4e-040 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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