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Information for unigene UN42508

FASTA Sequence
Unigene ID: UN42508Length: 1217  SNP
GGAAGTTGGAACAATTTCATTATATAAACCAGTGTATAATAACACTCGAGAGCTGAAAAACAACACGGTCAATTCGTCCAGAATCA
TTTAGGATTGTTTTCAGTAATTTGACTGATGTAATATGATGAAACATAAACAACGAAGAGAAGTGCCACACAAGTAAATCACAACA
ATATTAAAGAGTCTTTGTGCTAATGGTTGCACAACACTCAGTTCTGATGACTGAACTTAAACAAATGCACTTCCTAATGCCCAGCG
TCCACATTTTCACTTGTCTGTGTTGTGCTCTCTTTTCTCATCTGATAACATTCCATCAGTTTCGGATGCTGGCTCTCTGTCGTGTT
TATGATGCCTTCTCCTTCGCATTGCTCCATCATCCTCACTTGAAGACTCTCCCCATCGACCCCTTTTGTGTCGCCTTCTCTTTCCG
CTATCCTCTGAGTCGCTGGACGAGGCTGCACTCCTGTTGTGCCTGTGATATTTCCCTCGTCTTCTTCTTCCTCCTTTCTCTTCCTC
GCTATCGCTTGAAGTAACCACCTCATTAGGCCTGTGATGCTTTGCATGTCTTCTTGTGGCACCTTCCGCATTGTCATCATCAGAAG
TCTGCCTTGAGCTATGCGACTTGTGCCTCCGGTGGTGCCTTATCTTCATCCTGTGCTCGTCCTCTGACCCGCCGCTTTCGTACTCA
TCACTGCTACTTGAGGACCTTCTCTTATGCCTCCTGGATTTCCTGTCTTTCCTCCTGTCGCTGTCATCTGAATCAGAGTGTGCATG
CCTCCGGTGCTTACTGTGAGTTCTCCTTGACTTTCTTCTCACCTCGGGGCTACTATCACTTTCAGAGCTCGATTCAGACGCATCCC
TGTGTCTTCGCTTCTTTGACTTCTTCTCTTTGGTTTCAGCAGCCTTGGCAGCCGCCTCTAGCTTCTGCTCCCATTTCAGAGGAGCT
TCCTTCTTCGCAAGAATCTGTCGTTTCTTCTCTTCCACCATCTGCATGAACTTCTTGGAGTCCATTTGGATTCAAAAACCAGCTGA
AAATCTGATGCGAGTAAAAGGTGTAAGATTAGCCCAAGAAGAGAGGCAAGACAGAGCCTCCTGCGAAAGACAAACCACAATCGATA
ACGAATCGTAAGGAAAGGAAGAGAGAGAGGAGGAGAAGACAACCGCCTAGGGCTTCGCTTTTAGTCTTCTCGGAATGGTCTTCCAA
CAGATCTGTCTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565251 uncharacterized protein [Arabidopsis thaliana]8562e-089
XP_002875060 hypothetical protein ARALYDRAFT_322459 [Arabidopsis lyrata subsp. lyrata]8428e-088
NP_001041870 Os01g0120700 [Oryza sativa Japonica Group]4833e-046
EAY72321 hypothetical protein OsI_00176 [Oryza sativa Indica Group]4824e-046
XP_002283977 PREDICTED: hypothetical protein [Vitis vinifera]4645e-044

Swiss-Prot top hits (Blast detail)Scoree value
Q84Y18 CAX-interacting protein 42017e-015
P30189 DNA topoisomerase 11847e-013
Q9U7E0 Transcriptional regulator ATRX homolog1613e-010
Q551H4 Serine/threonine-protein kinase fray21523e-009
Q6P7Y3 Pre-mRNA-splicing factor 38B1514e-009

TrEMBL top hits (Blast detail)Scoree value
Q9SJV6 AT2G01100 protein8561e-089
Q9LGP3 Os01g0120700 protein4832e-046
A2WK25 Putative uncharacterized protein4823e-046
B9T1V6 Putative uncharacterized protein4563e-043
B9HJ82 Predicted protein4322e-040

Arabidopsis top hits (Blast detail)Scoree value
AT2G01100.1 unknown protein8567e-092
AT2G01100.2 unknown protein8567e-092
AT2G01100.3 unknown protein8567e-092
AT2G28910.1 CXIP4 (CAX INTERACTING PROTEIN 4); nucleic acid binding / zinc ion binding2016e-016
AT4G02720.1 unknown protein1433e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
103  38%
 
94  50%
 
121  13%

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