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Information for unigene UN42544
| FASTA Sequence |
| Unigene ID: UN42544 | Length: 694 |
SSR | | GGAGGAGAAGTCTATCTTCTCTCCGTCGTTCCCAACACCAATCGCATAATCAATCAATTGAACTTCAACAAAGAGAGAGAGAGAGC
GAAACCCTAATTTCTCTGATCGTAAAAAAAAAGAGAGAAACTAACTTTACTCAATTCCCTTTTTTCGATTAGCTCACATGGCGTCC
GGAAACTGTCGGTGGGAGCTCCTCGCGGCTTCTCTAGCCCTAACTTTAGCTCTGATTCACCACCTGGTGGATGCGAACTCGGAAGG
AGATGCTCTTTACGCGCTTCGCCGTAGCTTATCGGATCCAGACCACGTGCTCCAGAGCTGGGATCCAACTCTTGTTAACCCTTGTA
CCTGGTTCCATGTCACCTGTAACCAAGACAGCCGCGTCACCCGTGTGGATTTGGGTAATTCAAACCTTTCAGGACATCTTGCAAGC
TACGACACCAACTGCAACTGAAACAACTGGCAAAAGACCTGAAAAAAAAACAAGAAATGAGGGGGGTGACCTTAGAAGAACACTTC
ACCACTTTATCAAAATATCACATCTATTATGTAACAAGTATATATATGTATGTTCGTTGTGTGACACACTGAGATGTAACATTTGT
TGTATTGGTAGCAAGTTCTTTACCTTTGTCTGCATTAACATTTGTGTGTATGATCTGTCATATTAATACGAAAACTATGGATTTGT
GTGCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197608 leucine-rich repeat-containing protein [Arabidopsis thaliana] | 409 | 5e-038 |
| XP_002875621 leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | 354 | 1e-031 |
| NP_189960 leucine-rich repeat-containing protein [Arabidopsis thaliana] | 349 | 4e-031 |
| NP_974381 leucine-rich repeat-containing protein [Arabidopsis thaliana] | 349 | 4e-031 |
| CAB83146 leucine-rich repeat protein LRP-like [Arabidopsis thaliana] | 349 | 4e-031 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94AG2 Somatic embryogenesis receptor kinase 1 | 256 | 1e-021 |
| Q94F62 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 | 255 | 2e-021 |
| Q9XIC7 Somatic embryogenesis receptor kinase 2 | 252 | 4e-021 |
| Q9SKG5 Somatic embryogenesis receptor kinase 4 | 218 | 3e-017 |
| Q8LPS5 Somatic embryogenesis receptor kinase 5 | 195 | 1e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FPJ5 AT5G21090 protein | 409 | 3e-038 |
| Q6NQP4 At3g43740 | 349 | 3e-031 |
| Q9LZH3 Leucine-rich repeat protein LRP-like | 349 | 3e-031 |
| Q67XM7 MRNA, complete cds, clone: RAFL25-33-L05 | 335 | 1e-029 |
| C6TIK1 Putative uncharacterized protein | 331 | 4e-029 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G21090.1 leucine-rich repeat protein, putative | 414 | 6e-041 |
| AT3G43740.1 leucine-rich repeat family protein | 353 | 7e-034 |
| AT3G43740.2 leucine-rich repeat family protein | 353 | 7e-034 |
| AT1G71830.1 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase | 256 | 1e-022 |
| AT4G33430.1 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase/ protein binding / protein heterodimerization/ protein serine/threonine kinase | 255 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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