RadishBase

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Information for unigene UN42613

FASTA Sequence

Unigene ID: UN42613	Length: 825	SSR
AAACAAATCATGTGGATTATATTACTCACAAATAAAACCAATTTACACACTCTCTCTCCACTCCACCAAAAAAACCAATGAAATAC AAATTTGAAAATATAATCAGATGAGACCAGTGCTGTGGAACGGATTATTATGCTGGTTAACCGCAAAATCCCCAAACCCGCTTGTA TTTGGCTGCTGATAAACCGGGTTAACCGGGAATTCCCCAAAATTACCAAATGGATTACTACTGTTATTGGCTCGGGGGGTTGGTGC TAATGCTAGCTGTAGTTGATGCTGCTGCTGCTGCTGCCCATAAGTTGGCTGGTAAACACCAAAGGGGTTGTTCACAGCTGGTTGCG GAGGTGGTGGAATCCCATTGGACGTTGCAAAAGGATCGTGAACTTCAAATGGGTTGGGAGCTGGTGCACCGTAGACAGGGCGTTGA GAGGCTATGTAGGCTCCATCATCGTATAGACTGTTCAGTGTAAGCGTGTCTAACCCACCAGCCAATTGCCTATCGGTGGCTGCAGA GATATCGTTGCTCGGTGTTGTTACCAGCGCAAGCTCCCATCCTGTAGGGTCGTAATCGTTTGCTTGGAAAGAACGAGGCGTTGAAG AGTTTCCATCATTTGAGATTATGGCTAAAGCAAGTGCATTTTGGTCTTCGATCGCTGATGCATCAGGTACGGCAGTATTCAGACCC AGTAAATCATCTGTATCAATGATGTTCTGTGACTGAGTGGTAGCTAAAGTCGGAGGAGGCGGAGGAGAATGTTCTGTCTCTTCAGA TGCAAGAACCACATCATTATCTGAAGGCAACACAAGCTCACGTTCTTCATG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002875082 hypothetical protein ARALYDRAFT_904366 [Arabidopsis lyrata subsp. lyrata]	874	8e-092
AAM67368 unknown [Arabidopsis thaliana]	871	2e-091
NP_565267 putative clathrin assembly protein [Arabidopsis thaliana]	869	3e-091
AAD12692 expressed protein [Arabidopsis thaliana]	869	3e-091
CAA71879 hypothetical protein 194 [Arabidopsis thaliana]	670	4e-068

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LBH2 Putative clathrin assembly protein At2g01600	869	1e-092
P94017 Putative clathrin assembly protein At1g14910	670	2e-069
Q9LHS0 Putative clathrin assembly protein At5g35200	265	2e-022
Q8VYT2 Putative clathrin assembly protein At4g25940	176	3e-012
Q9LVD8 Putative clathrin assembly protein At5g57200	175	4e-012

TrEMBL top hits (Blast detail)	Score	e value
B9SP68 Clathrin assembly protein, putative	546	6e-054
B9HJD6 Predicted protein	531	3e-052
B9HW44 Predicted protein	504	4e-049
B4FLN4 Putative uncharacterized protein	383	5e-035
B7ZXB5 Putative uncharacterized protein	380	1e-034

Arabidopsis top hits (Blast detail)	Score	e value
AT2G01600.1 epsin N-terminal homology (ENTH) domain-containing protein	870	1e-093
AT1G14910.1 epsin N-terminal homology (ENTH) domain-containing protein	670	2e-070
AT5G35200.1 epsin N-terminal homology (ENTH) domain-containing protein	265	1e-023
AT4G25940.1 epsin N-terminal homology (ENTH) domain-containing protein	176	3e-013
AT5G57200.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	175	4e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			50%


19	1			50%

Unigene Members	Member information