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Information for unigene UN42623

FASTA Sequence
Unigene ID: UN42623Length: 659 SSR 
TGGCTGCGCGTACACTCCACGCGCTATCCACCTCCCCCTTGTTTCTCCCTCTTCTTCTTCTTCTTCTCTCCGCCGCGTCTTCCCCG
ACCAAGGCTCAGCAACCGTACGTCAACAACCACCAGCTAGACTGCGAGAACCGAAACTTCGACAACATAACCAACGGCTTCACCTG
CAACGGCCCACCCTCGTGCCGCTCCTACCTCACTTTCTGGTCTCAACCACCGTACAACACCCCCAGCTCCATCGCCGGACTCCTCA
ACGCCTCCGCCGCCGAGATCCGGACCATCAACAACCTCACCTCCCTAACCACCACCATCCCCACCCGTGATCTCGTCGTCGTCCCC
GTCACCTGCTCCTGCTCCGGCAACGGTGGCCTCTACCAGCACAACGCCACCTACAGACTCTCCGGCCGAACCGTTGAAACTTACTT
CTCCGTGGCCAACGACACCTACCAAGCTCTCTCCACGTGTCAAGCCATGATGTCCCAGAACCCTTACGGCGAGAGGAACCTGACCG
CCGGGTTAGACCTCCTCGTCCCTCTCCGCTGCGCCTGCCCCACGCAGAACCAAACCGCCGCGGGGTTCAGATACCTCCTGACTTAC
TTAGTCAAGCAGGGAGACAGCGTCTCCGCCATCGCCGAGATGTTCAGAAGCTCGACG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_180916 protein kinase family protein [Arabidopsis thaliana]8234e-086
XP_002881290 hypothetical protein ARALYDRAFT_482304 [Arabidopsis lyrata subsp. lyrata]8234e-086
XP_002307830 predicted protein [Populus trichocarpa]5824e-058
BAI79277 LysM type receptor kinase [Lotus japonicus]5771e-057
BAI79278 LysM type receptor kinase [Lotus japonicus]5644e-056

Swiss-Prot top hits (Blast detail)Scoree value
Q02817 Mucin-22263e-018
Q9FPQ6 Vegetative cell wall protein gp11744e-012
Q9FLQ7 Formin-like protein 201663e-011
P21997 Sulfated surface glycoprotein 1851629e-011
Q9T0K5 Leucine-rich repeat extensin-like protein 31531e-009

TrEMBL top hits (Blast detail)Scoree value
O22808 At2g335808233e-086
B9H5Z0 Predicted protein (Fragment)5823e-058
D3KU00 LysM type receptor kinase5771e-057
D3KU01 LysM type receptor kinase5643e-056
B9R8W3 Kinase, putative5617e-056

Arabidopsis top hits (Blast detail)Scoree value
AT2G33580.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein8232e-088
AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein3545e-034
AT1G44191.1 Encodes a ECA1 gametogenesis related family protein1691e-012
AT4G22505.1 INVOLVED IN: lipid transport; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22485.1).1645e-012
AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related1628e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  100%

Unigene MembersMember information