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Information for unigene UN42626
| FASTA Sequence |
| Unigene ID: UN42626 | Length: 1026 |
SSR | | ATCGATCAGAATCTAATTCACAGATCACAAAAGATGCAACCGGGAGACTACAATTCCTATTATCATCACCAGCCTCCTCCTCAGTT
TCCAAACCCTCCCCCTAATCCTTACCCCACCCCATCTCCTCCCACCGCCGATCATCCTCAAAACACGTACGCGTCGGCTCCACCGT
TTACCGGCGGTTACGGCGCAGGAGATTACTCCCAGAATTATCATCAATCTTACGGCCAAAACACCGAACATGTCCCTCCTCCTCCT
CCTTCAGCTCCTTCCTTCACTCCTCCTCTGGCGACAAACCCTAATTCTTATTCCGCCTTGAACCAACCGTCCCCGATTCATCCACC
AGCACCACTATCATCTTATGGATCGTTTGATTCTACTGCTCCTCCTCCTCCGTATCAGCAAACTCAGCCCATGTATTATCCACCCT
ATGATCATCCTCCTCCATCATCTGCACCTGCAGCTGCACCGAATCCTAATCCTAATCCGCCTTACTCATCCTACTCTCCAACTCCT
TACACTGGAGGAGGAGGAGGAGGATCTTCGTACGACAAGCCTGTGAAATTCGATCAACCTTCTTATGGCGATTACGGCAGGACCAG
ATCCGATTCAGGCTCTGATCTATACGGAAAACAACAACGATCTGGCAGCAGCGGAGGAGGAGGAGGAGGAGGAGGATACCCAGCTT
TCGATGATTCTTCCTCCTACGGAGATGGAGTCTATGCCTACTCAGGAGGCAAAGTTGAGCCGTACGGGTCTCGTGGAACAGCGCCT
AAATCATCGAATTCCACCTTGTTCGACGATTACGGACGGCCCATTAGCGGTATAGATTCCTCCTCTTCCGCCGCTAGCTCTAAATC
CGCTAAGATCGCTAGAGCTGTCCCCAAGGCTGATGTCCACGAAGATGCCTCCGGTGGTGTTCAGAAGTTTCGTGTCAAGTTGTTGG
CTGAGACTTACGGACAGACAACTACTGATGTTCTTTGTCAGATTGGTTTGGATGGCCTCCGTATGCTTTGATCCAGTACT
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| GenBank top hits (Blast detail) | Score | e value |
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| AAF79901 Contains similarity to an unknown mRNA from Triticum sativum gb|AF004816 and contains a Lipase/Acylhydrolase with GDSL-like motif PF|00657 and FYVE zinc finger PF|01363 domain. ESTs gb|AV541158, gb|AA394699, gb|AI993442, gb|T88167, gb|BE038227, gb|AI993489, gb|T88521 come from this gene [Arabidopsis thaliana] | 1000 | 3e-106 |
| AAK96734 Unknown protein [Arabidopsis thaliana] | 1000 | 3e-106 |
| NP_564103 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] | 1000 | 3e-106 |
| XP_002890371 hypothetical protein ARALYDRAFT_312939 [Arabidopsis lyrata subsp. lyrata] | 1000 | 3e-106 |
| BAJ53102 JHL20J20.9 [Jatropha curcas] | 725 | 2e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9T0K5 Leucine-rich repeat extensin-like protein 3 | 186 | 3e-013 |
| O65375 Leucine-rich repeat extensin-like protein 1 | 185 | 4e-013 |
| Q84ZL0 Formin-like protein 5 | 184 | 5e-013 |
| P13983 Extensin | 180 | 1e-012 |
| Q6ZCX3 Formin-like protein 6 | 172 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q940J6 Putative uncharacterized protein (Fragment) | 1000 | 2e-106 |
| Q9ASS2 At1g20110/T20H2_10 | 1000 | 2e-106 |
| A5B1E0 Putative uncharacterized protein | 632 | 9e-064 |
| B9R8C9 Zinc finger protein, putative | 396 | 2e-036 |
| B9GQR8 Predicted protein (Fragment) | 356 | 9e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G20110.1 zinc finger (FYVE type) family protein | 1028 | 6e-112 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 186 | 3e-014 |
| AT1G12040.1 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall | 185 | 4e-014 |
| AT5G38560.1 protein kinase family protein | 172 | 1e-012 |
| AT1G31810.1 actin binding | 170 | 2e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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