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Information for unigene UN42642

FASTA Sequence
Unigene ID: UN42642Length: 881 SSR 
GTTCATGGTCCCCTCTTTATCTCTCTTCTTAGCCCATATCTCTATCAATCTTATAAACTCTCTCTCTCTCCCTCTCTTTCTCTCCT
CTTTTTAGTTCTTGAGAGATTGTTCCTAATTATAATTTCTTTCTTTCTTGGAGAGAGCTTCTTGCTCCGTAAACAGTAGAGAGAGA
AATATTCATTTGAGAAAAGATCAGATAAAACCGTGCTAATCAGTGAAGTTAGGTACAAAAAACCCACTTTCTACTTTTGTATAATT
AGGTCAATCTCATCCACCACCATACTCTTCTCTCCACCAATTCTCCTCCCTTTTCTCAATTCCAAAACTAGGGTTTCATCTCCTCT
TTCTCGTGTACCCCAAAACAAGAAAGATGAATCAAGAAAATCTTTAGAGATCTGAGTTTGGTTCCCCCAAAACAAGAAGATGAATC
AGGAAAACAAGAAGCCTGTGGAAGAATCTTCTTCAATGGAGAGAGAACACATGTTTGACAAAGTAGTAACACCAAGCGACGTAGGG
AAACTAAACCGACTCGTGATCCCAAAGCAACACGCAGAGAGATACTTCCCTTTAGACAACTCCTCAACAAACAACAAAGGGTTGCT
TCTAGACTTCGAAGACCGAACAGGAAACTCATGGAGATTCCGTTACTCTTACTGGAACAGTAGCCAAAGTTATGTCATGACAAAAG
GCTGGAGCCGTTTCGTCAAAGACAAGAAGCTTGATGCTGGTGACATCGTGTCTTTTCAGAGAGATCCTTGTAATAAAGACAAGCTT
TTCATCGACTGGAGGAGGCGACCAAAGATTCCAGATCATCATCATCATCAGTTCGCCGGAGCTATGTTCCCTAGGTTTTACTCTTT
CCCTCATCCTCAGATGCCGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAC42301 putative RAV [Arabidopsis thaliana]7645e-079
NP_191756 B3 domain-containing transcription factor NGA2 [Arabidopsis thaliana]7645e-079
XP_002876649 hypothetical protein ARALYDRAFT_486704 [Arabidopsis lyrata subsp. lyrata]7403e-076
AAM67302 RAV-like protein [Arabidopsis thaliana]7242e-074
NP_566089 B3 domain-containing transcription factor NGA1 [Arabidopsis thaliana]5908e-059

Swiss-Prot top hits (Blast detail)Scoree value
Q9M268 B3 domain-containing transcription factor NGA27642e-080
O82799 B3 domain-containing transcription factor NGA15903e-060
Q9MAN1 B3 domain-containing transcription factor NGA34911e-048
Q7F9W2 B3 domain-containing protein Os04g05814004864e-048
Q8LMR9 B3 domain-containing protein Os03g01209004741e-046

TrEMBL top hits (Blast detail)Scoree value
C3VMM3 NGATHA27643e-079
D4HU08 NGATHA15986e-060
C3VMM2 NGATHA15905e-059
B9RYX9 Transcription factor, putative5199e-051
B9RMW1 Putative uncharacterized protein5172e-050

Arabidopsis top hits (Blast detail)Scoree value
AT3G61970.1 NGA2 (NGATHA2); transcription factor7642e-081
AT2G46870.1 NGA1 (NGATHA1); transcription factor5903e-061
AT1G01030.1 NGA3 (NGATHA3); transcription factor4919e-050
AT4G01500.1 NGA4 (NGATHA4); transcription factor4165e-041
AT2G36080.2 DNA-binding protein, putative4041e-039

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  100%

Unigene MembersMember information