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Information for unigene UN42646
| FASTA Sequence |
| Unigene ID: UN42646 | Length: 2000 |
SSR | | CTGCAGAACCACAGTTGAGGCCACCGATAAATCCCGGGAACTCCCAAGGATTTCCAACTCACAAAGTTCAATCCCAGCCTATGAGT
TTCCAGCAGAGGCAACCTAGAGAAAATGCGACTCAACATAGCGAGACTGTAGGAGGAGATAGCCCATCAACCGCTGATAGTCGGGG
TTCTCGTTCAAGTGTTGCCTATGGCCAGAACTATGGTATGCAGATGCAACCAACTAACTTGGGTCTGATGAGTTCAGCAGCCCCAG
CTGGTGGAGTTGTCGTATCCTCTAGCAATCATGGCGAAAAGAAACCACAGCAGGTTTCAAAGGCTGGTGGTGAATCGTTTCCGCCC
CAGGGTTATGCCATGACGTTTGCGACATTCAACGGGGCTAATAGTACTCCTTCACTGAACATGTCAGCAATTCCTCAAAATCACGC
TATGTTCCACAGCATTCCGGAAGCAGCAAGGCAAGGTTATCAAATGATGGCAGCGAATGTTGCTGCTCAAGCAGCCCAGCAGAAAA
TGAACTACAGTGCTCCTTCAGATGATGGAAAATCGGGGTCTAATACTACTACCAATACGAGGGAAGAACAAAGGAAAACGGGAGCA
GCAACGGGGAAAACGAGTGGCCTGAATGGTGCGCAATCTATTGCGTTCTCTAACAAACCCGACTTGGCTGATACATCTGTTTCTGC
TGTAACGAGTGGTAGCATCGTTGATACATCCCGTTTGCACAACCATGGTTCTACTCAGCCACAGAGTTCCAGTTCTGTCCTGACGT
CTCATCAGCAGCAGCAGCTGCAGCATTTGCAACAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCATATGCAACGGAGTCAATTG
CAGCAACCTTACACCACCATGTATCTCCAGAAGCAGCAACGGTATGCAACTTCAGTCGCTGCTTCTGCTGCTAAAACCAAAGGGCC
TGTGGCGGCGAGTAATGGGAGTGGTTTCCCTGATCATAATATCTCTGTATCACCCGCGGGAAGCACTAAGTTTACAAATGCCAATT
CAGGGTTTCCTCAAAACCTTGTCCAGTCAAGCAGCACTCAAGCACAGTCTCCTCAGTGGAAAAACAATTCACCCAGGGCATCAAAC
ACTTCCCAAGCCCAGTCTCCGTCCATACTATCGCCATCATCATCTGCTGCCGCTGCATCGTCAGTAAGAAACGTATCGCATAAACA
GCAAAGCCGTCCCCAGCAGTCGCAGATATCTTTTGCAGCAAACTCAAAACCTATGGCGTCTGGTTCGTCAATGCAGCAGGTGCAAG
GAGGTACCAACAACCAGGCTCCGTCTCCACCAATGTTAGTTGGGTCACCTTCAACGTCTTCCGGTCTCCAGAAGCGCGGGTGGGAG
CCCAAGAACTACTGCTTCAGCTTCATCAGCTGTGAACAAAACTGTACAAGCATCGTCGACTACTCACTCATCATCTCAGCCGCCCA
AGAACCAGCAGTCTTCATCCGCAGCTTCTCCTGCGGGTGGAAGGAACAACGGTCCTTCAGTTCTGGGGAACCCGACTACAAGCTCT
GGATCCAAGTCCCAACAACAACAGCAACAGTTGCCAAAGCATGGGTTGCAGCAACAGTCCCAGCTTTTCTTCTCTAATCCTTATAT
GCAATCTCAGCATCAACATCAACAGCAGCAGATCACCGTACCTCCTGGTGGTTATTACATTCAAAGACAACAGCAACAGCCAGGTT
CATCAGCTGCTGCTTCCACCGCCGTTTGTCATCCAGTCAGCCTCTCCGCCTGTACCATAGGAGCCGTTACCACCACTTCAGATCCA
GCGAAAGCCATGGCTGCTGCAGCAGCAGCCAGTAACATGAAAGGAGGTGTGGGGAAGACGCAGCAACATCAGCTAGTGCCTCCAGG
GTTTCCGTATGTACACGCGGTTCCCTCTGCGGTACAGGTAAAGCCCGTAGATCAGAAGCAGCAAGCCGGCGAGTGAAAGACCCCTT
AAAAACCATTTGTGAACTTAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883360 time for coffee [Arabidopsis lyrata subsp. lyrata] | 1776 | 7e-196 |
| BAB01776 unnamed protein product [Arabidopsis thaliana] | 1745 | 3e-192 |
| NP_566705 protein TIME FOR COFFEE [Arabidopsis thaliana] | 1745 | 3e-192 |
| AAK56246 AT3g22390/MCB17_12 [Arabidopsis thaliana] | 1745 | 3e-192 |
| NP_001118676 protein TIME FOR COFFEE [Arabidopsis thaliana] | 1745 | 3e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q94KE2 Protein TIME FOR COFFEE | 1745 | 1e-193 |
| Q9Y0C9 Ras-interacting protein RIP3 | 164 | 3e-010 |
| Q17RH7 Putative protein TPRXL | 141 | 1e-007 |
| Q54HX6 Myb-like protein I | 137 | 3e-007 |
| Q54UK0 Phospholipase D A | 136 | 4e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B3H7F6 Uncharacterized protein At3g22380.2 | 1745 | 2e-192 |
| B9RSQ0 ATP binding protein, putative | 770 | 2e-079 |
| B9HJW4 Predicted protein | 722 | 8e-074 |
| B9HV72 Predicted protein (Fragment) | 380 | 4e-034 |
| A5BQH4 Putative uncharacterized protein | 253 | 2e-019 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G22380.1 TIC (TIME FOR COFFEE) | 1745 | 1e-194 |
| AT3G22380.2 TIC (TIME FOR COFFEE) | 1745 | 1e-194 |
| AT1G19220.1 ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor | 126 | 6e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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