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Information for unigene UN42654

FASTA Sequence
Unigene ID: UN42654Length: 673 SSR 
TCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAATCCAATCCTTTTGTGCCTCTTTATAATCCAACACAGTAAAAATG
TCGAATATCCAACCTGAGGATCCTGCACCCTACATGAACCATGTTGGTGATCAAATGCAAGAGGCTCATAACGGTTTAGAGGATGA
TTTTCATGGGGATGCGTGGGACTCTGATGTCGACGAGTTTGACTACTCTAATAACAAAATAGGTGATACTTCAGCTGCTCAAGCTC
GGAAAGGGAAAGACATCCAGGGCATTCCTTGGGGCAGGCTCATCATTACCAGAGACCAATACAGACAAACTAGACTTGAACAGTAC
AGAAACTATGAAAATGTCCCTACTTCTGGTGATTCATCGGCCAAAGATTGCATGGTCACACAGAAAGGGGCCCTTTTCTATGACTT
CTGGCGTAACTCAAGATCTATCAAATCAAGTATTATTCATTTCCAGTTGAGAAATTTGGTATGGGCACATCTAAGCAAATGTCTAC
CTTATGTCAAACTTTTTGGTGAACGGTGAACCACTATTCTACTTTGACATCTCGAAAGAGAGAGGTTCTCAATGTTCAAGGTCATG
TTTCCCCTTCCGAGAAACATCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTTGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564699 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]5368e-053
XP_002894518 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]5341e-052
XP_002882817 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]5242e-051
NP_566453 transducin/WD40 domain-containing protein [Arabidopsis thaliana]5125e-050
XP_002330572 predicted protein [Populus trichocarpa]4426e-042

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5N4 Putative uncharacterized protein At1g556805366e-053
Q94AB4 AT3g13340/MDC11_135123e-050
B9N5K3 Predicted protein4424e-042
B9GHK2 Predicted protein4301e-040
B9T0K0 Putative uncharacterized protein4202e-039

Arabidopsis top hits (Blast detail)Scoree value
AT1G55680.1 WD-40 repeat family protein5364e-055
AT3G13340.1 WD-40 repeat family protein5122e-052
AT5G56190.1 WD-40 repeat family protein3958e-039
AT5G56190.2 WD-40 repeat family protein3958e-039
AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).2774e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  100%

Unigene MembersMember information