RadishBase

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Information for unigene UN42682

FASTA Sequence

Unigene ID: UN42682	Length: 1219	SSR
CCCTTTTCCGTCTCGAATCCGTTTTTCTCCCTAAACCATCACTGAGATCGATCGTGAAACTCCTCCCATCAACCTCAGGTCTAAGA TCCATCTCCTCCATGGCATCTTCTTTCAAACCCGAACAAGCTAGAGTCCCCTCTGCTCTTCCTCTCCCAGCTCCTCCGTTGACCAA ATTCAACATCGGATTGTGTCAGCTATCTGTGACTGCCGACAAAACAAGAAACATCTCTCACGCCAAGAAAGCCATCGAAGAAGCTG CTTCCAAAGGAGCTAAGCTTGTTCTCTTGCCTGAGATTTGGAACAGTCCGTATTCGAATGATAGTTTTCCGGTTTACGCGGAAGAG ATTGATGCAGGTGGTGGTGAGGCTTCTCCTTCGACCGCAATGCTTTCCGAAGTTTCTAAACGTCTCGGGATCACTATCATTGGTGG CTCCATACCCGAAAGAGTCGGGGATCGTTTGTATAACACTTGCTGTGTCTTTGGCTCTGATGGTGAGCTCAAAGCTAAGCATCGAA AGATACATTTATTTGATATAGACATTCCCGGGAAGATTACTTTCATGGAATCAAAAACTCTTACAGCCGGAGAGACACCAACAATC GTTGACACTGATGTGGGACGTATTGGAATAGGCATATGCTATGACATCCGGTTCCAGGAGCTAGCTATGATATATGCTGCAAGAGG GGCTCATTTGCTGTGCTACCCAGGAGCATTTAACATGACAACTGGACCTCTCCATTGGGAGTTACTACAAAGGGCAAGGGCTACGG ATAATCAGTTATATGTAGCGACGTGCTCACCTGCCAGAGATTCAGGAGCTGGCTACACTGCTTGGGGACACTCCACACTCATCGGG CCTTTTGGAGAAGTTCTAGCGACGACTGAGCATGAGGAAGCAATCATCATAGCAGAGATTGATTACTCTATCCTTGAACAACGAAG GACAAGTCTTCCATTGAGTAAACAGCGTCGGGGAGATCTCTACCAGCTTGTAGACGTGCAGCGCCTGAACTCTAAATGAGTGCAAC AGAGAGAGAGAGAGAGTGAGAGTGAGATGTTGTCTTTAGCTTTTGTTGAGTCTGAGAACAGTTTGGTTACTTGCAACTTCTTGACA TGTCAGAGATGCAATAAAAAAAAAAAAAACTTCTTGACATGTCAGAGATGCAATAAATAAAAACTTGATGTTTGAGATTAAATGGA ACAAAATAAATAAAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871509 carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata]	1586	4e-174
NP_196765 omega-amidase [Arabidopsis thaliana]	1583	9e-174
XP_002279687 PREDICTED: hypothetical protein [Vitis vinifera]	1402	9e-153
CBI20702 unnamed protein product [Vitis vinifera]	1392	1e-151
XP_002309478 predicted protein [Populus trichocarpa]	1386	6e-151

Swiss-Prot top hits (Blast detail)	Score	e value
Q6IR61 Omega-amidase NIT2-A	820	1e-086
Q9NQR4 Omega-amidase NIT2	814	6e-086
Q28IE5 Omega-amidase NIT2	814	6e-086
Q6INI7 Omega-amidase NIT2-B	809	2e-085
Q497B0 Omega-amidase NIT2	798	4e-084

TrEMBL top hits (Blast detail)	Score	e value
Q8RUF8 AT5g12040/F14F18_210	1583	6e-174
B9HD27 Predicted protein	1386	4e-151
C0P9R6 Putative uncharacterized protein	1329	2e-144
B8A2V8 Putative uncharacterized protein	1323	9e-144
B6SKS2 Putative uncharacterized protein	1318	3e-143

Arabidopsis top hits (Blast detail)	Score	e value
AT5G12040.1 carbon-nitrogen hydrolase family protein	1584	3e-176
AT5G12040.2 carbon-nitrogen hydrolase family protein	1189	2e-130
AT4G08790.1 nitrilase, putative	352	2e-033
AT5G64370.1 BETA-UP (beta-ureidopropionase); beta-ureidopropionase	173	1e-012
AT5G22300.1 NIT4 (NITRILASE 4); 3-cyanoalanine hydratase/ cyanoalanine nitrilase/ indole-3-acetonitrile nitrilase/ nitrilase/ nitrile hydratase	153	2e-010

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			50%


12	1			50%

Unigene Members	Member information