Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN42711

FASTA Sequence
Unigene ID: UN42711Length: 852 SSR 
CAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTTAAGATAAGAGAATGAAGCA
CAACAATGAGATCCAAGGCTCACACTTCAGGAAACACTGGCAGAACAATGTTAAAACATGGTTCAACCAACCTGCCCGGAAAACCA
GAAGAAGAGTTGCGAGACAGGAGAAGGCAGTGAAGATCTTCCCTCGTCCCACCTCTGGAGCTCTCCGTCCTGTTGTTCACGCACGG
ACAATCAAGTACAACATGAAAGTCAGAGCCGGTAAAGGCTTCACTCTCGAGGAGCTTAAGGCTGCTGGTATTGCAAAGAAGTTGGC
TCCAACGATTGGAATCTCAATTGATCACCGTCGTAAGAACCGTTCCTTGGAGGGTCTTCAATCCAATGTTCAAAGGTTAAAGACCT
ACAAGGCCAAGTTGGTTGTCTTTCCTCGCCGATCCCGTGTAGTCAAGGCTGGTGATTCTACTCCAGAGGAGCTTGCTAATGCAACT
CAAGTCCAAGGAGGTTACATGCCTATCGCTAGAGAGAAGGTTGCGATGGAGCTTGTGAAGGTGACTGCTGATATGAAGTCATTCAA
GGCTTATGACAAGATCCGTCTTGAGCGCACTAACAAACGCCATGCTGGTGTCAGAGCCAATAGAGCCACCGATGCTGAGAAAGAAG
AGAAGAAATAAGATATTTGCTTTGTCTTTAAGACTCTTGCTTTCATGGGATTTTATCAAAGCCTTAAATCTGTGGGTTTTCTGGTT
ATATTATATGAAAGAGATTATAATAGTATACACATGATATACCTCGGTACTGTTCATGGTATCTATTTGGACTTTGGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874151 60S ribosomal protein L13 [Arabidopsis lyrata subsp. lyrata]9455e-100
NP_197778 60S ribosomal protein L13-3 [Arabidopsis thaliana]9312e-098
XP_002877641 ATBBC1 [Arabidopsis lyrata subsp. lyrata]9151e-096
P41129 RecName: Full=60S ribosomal protein L13-2; AltName: Full=Cold-induced protein C24B9123e-096
NP_190470 60S ribosomal protein L13-1 [Arabidopsis thaliana]9106e-096

Swiss-Prot top hits (Blast detail)Scoree value
Q9FF90 60S ribosomal protein L13-39319e-100
P41129 60S ribosomal protein L13-29121e-097
P41127 60S ribosomal protein L13-19103e-097
P41128 60S ribosomal protein L13-19004e-096
Q9SMT4 Putative 60S ribosomal protein L13-28172e-086

TrEMBL top hits (Blast detail)Scoree value
B9DGA4 60S ribosomal protein L139104e-096
A1YMY6 60S ribosomal protein L138997e-095
B7FGS0 60S ribosomal protein L138754e-092
B7FGV8 60S ribosomal protein L138665e-091
B9STE6 60S ribosomal protein L138648e-091

Arabidopsis top hits (Blast detail)Scoree value
AT5G23900.1 60S ribosomal protein L13 (RPL13D)9327e-101
AT3G49010.1 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome9112e-098
AT3G49010.2 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome9112e-098
AT3G49010.3 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome9112e-098
AT3G49010.4 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1); structural constituent of ribosome8961e-096

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  33%
 
122  67%

Unigene MembersMember information