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Information for unigene UN42716
| FASTA Sequence |
| Unigene ID: UN42716 | Length: 470 |
SSR | | GGGCTGCCCATTTCGTTCGTCGTCGTACATCTCTCTCTCTCTCTCTCGCTCTCCTCGCTCATCTACTCAGAGAATTTGTGCAAGGT
TGGAAAATGGCAGGACTCAAGGTTGCGCATGCCACACTTAAAGGCCCGAGTGTGGTGAAGGAATTAGTTATCGGTTTGGCGCTGGG
TTTAGCTGCTGGTGGTCTCTGGAAAATGCACCACTGGAACGAGCAGAGGAAAACCAGAACTTTCTACGACTTGCTCGAGAGAGGCG
AGATCAGCGTTGTCCACCCTGCTGAAGAGTGAAATTCAACACTATGCCAAACCACTCTCTCAACCTCTATTTTTATGTTATTATTA
TTGTTTCTTGACTTCTTAGACAAAAGTTAAGAAAGTGTTGATTGCAGAAGAAATAAACAACAAATCGGATATCTTTTGTTAAATTT
CAGAACATCTTTCTTGATTTTATTTGAATGTTTTTGGGAT
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002880298 cytochrome c oxidase subunit VC family protein [Arabidopsis lyrata subsp. lyrata] | 304 | 2e-026 |
| NP_182260 putative cytochrome c oxidase subunit 5C-1 [Arabidopsis thaliana] | 299 | 7e-026 |
| XP_002862722 cytochrome c oxidase subunit VC family protein [Arabidopsis lyrata subsp. lyrata] | 299 | 7e-026 |
| Q9LZQ0 RecName: Full=Cytochrome c oxidase subunit 5C-2; AltName: Full=Cytochrome c oxidase polypeptide Vc-2 | 295 | 2e-025 |
| XP_002866426 hypothetical protein ARALYDRAFT_496289 [Arabidopsis lyrata subsp. lyrata] | 293 | 3e-025 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O22912 Probable cytochrome c oxidase subunit 5C-1 | 299 | 5e-027 |
| Q9LZQ0 Cytochrome c oxidase subunit 5C-2 | 295 | 2e-026 |
| Q9FLK2 Probable cytochrome c oxidase subunit 5C-3 | 289 | 8e-026 |
| Q9SXX7 Cytochrome c oxidase subunit 5C | 271 | 1e-023 |
| Q42841 Cytochrome c oxidase subunit 5C | 270 | 1e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q2HIR0 At5g61310 | 289 | 7e-025 |
| A1YMW4 Cytochrome-c oxidase | 284 | 2e-024 |
| D6BR49 Cytochrome c oxidase polypeptide Vc | 279 | 9e-024 |
| B9RNE3 Cytochrome c oxidase polypeptide Vc, putative | 276 | 2e-023 |
| C6T2P2 Putative uncharacterized protein | 275 | 3e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G47380.1 cytochrome c oxidase subunit Vc family protein / COX5C family protein | 299 | 6e-028 |
| AT5G61310.1 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 289 | 9e-027 |
| AT5G61310.2 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 289 | 9e-027 |
| AT5G61310.3 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 289 | 9e-027 |
| AT5G61310.4 cytochrome c oxidase subunit Vc, putative / COX5C, putative | 289 | 9e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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