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Information for unigene UN42842

FASTA Sequence
Unigene ID: UN42842Length: 933 SSR 
GGAAGCTGGTGATGACAAGAGCAACATTGATATCGAAATGGGAATCCAGCAGCATCAAGATTCATTACTTGAACTTGGATGTTCCT
GCAAAACGAGCTTGCTTTGGTACACTACGCTTGTGCACTCAAATGGTTCCTCAACCATGGATCCACCGTGTGTGAGATCTGCGGGA
AAGCTGCAGAAAACATAAAAACTGCCGACGTCAGCAAAGCAGTCATTGCCTTGAGAGATTACACGGCGGCACTAAGAGAAAGAACA
GGTCCAAACTCTGTATCACCGGTGAGTACTACTACAGATGAAGTTGCTGCCATTAGAAGGCAACGACTTAGTGAGATTTCTTCATG
GTTTGGCCCTCATTCCCTGAACAACAACAACAACAGTAGCGGTAGCTCTGTTGCAGCTTCTCAGGCTGTGTCCGAACAACCTTTAG
GTGTTGTGAGCTTTGACATCTCGCCTATGGAAAATCGTGCAACTAAATGGGCTGTGGAAGGTACAGGGATTCTACTTGCTACTGGT
TTACTCACTGTTACTCTTGTCTGGCTCATTGCTCCTCGTGTTGATAAGAAAACTGCTAGGAGTGGAGCTCATATCCTTCTTGGTGG
TCTTTGTGCTTTAATAGTAGTCATCTTCTTCAGATTTGTTGTGCTCACAAGAATAAGGTATGGTCCTGCACGCTACTGGGTAATCT
TGTTCATCTTCTGGTTTCTTGTGTTTGGTGTTTGGGCTTCTCGTTCTAATGCTCACAATGACACTTGAATCCATTTTCATCATCTC
TCTTCTCTGTGGAGAAAAAAAATGTACCATTGCTATATGTATATGTGTATATATCGGTCACTGGTTGATATATTCTTCTTGAGCAC
AGCAAGGTGCCTGCTGTACCCTCCTGTAGCGCATATTTTTTAAATACTACATATAGTTTCCTGATTACTGTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002864866 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]9269e-098
NP_201183 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]9043e-095
XP_002871357 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]8703e-091
NP_568206 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]8676e-091
AAL14416 AT5g63780/MBK5_26 [Arabidopsis thaliana]8676e-091

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8GUG6 At5g637809042e-095
Q93ZD2 AT5g63780/MBK5_268674e-091
Q9C5A2 At5g087508674e-091
B9H4N8 Predicted protein8022e-083
B9HF63 Predicted protein7913e-082

Arabidopsis top hits (Blast detail)Scoree value
AT5G63780.1 SHA1 (shoot apical meristem arrest 1); protein binding / zinc ion binding9041e-097
AT5G08750.1 zinc finger (C3HC4-type RING finger) family protein8682e-093
AT5G08750.2 zinc finger (C3HC4-type RING finger) family protein8682e-093
AT5G08750.3 zinc finger (C3HC4-type RING finger) family protein8682e-093

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information