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Information for unigene UN42926

FASTA Sequence
Unigene ID: UN42926Length: 1081 SSR 
GATATTCCCTCAGGATCATCAAACAACCAGCACCAAAGTATAAATATAAAGAAATAAAACAAGACAAAGGAAAGGGAAACATATGT
TTTTGTTCTGACTACACAACAGCAAATACAATGCAAAAGCATTTTTCTTGTGTTTTCTACTTTGATCATCTCTCCTCTACTTGTTG
CGCTTTTATTGTTCGCATCTTCTCCTCCCATCTGCCCTGCTTGTTTCTCTTTTGACACCTTTAAAAAACATCCGGATTGAATCTTT
GCGGCATCATAAAGTTGCCGTGTTCCATTTGCTCCAGTTGCATTTTCAATGCGTAATTATTCACCTCCAGATTCCTGACCTTCCCC
TGGTACTGAGGAATCAGTTGCTTAAAAAATTCTAGCTGCTGGTTAGCATCTTCTAAGGTCTTCTGCCGATCATGCTGGATAGCAAC
AGCACGTTTCAGCAATGTGTTGTCCTTGATCAAGACCTCCACTTGTTGCTGCGCTACCACACTCTCCTCTTGGAATTTTTTGGCAG
CATCATCGTGAGCACGTGCGCTTAACGTCTTCTCTAAAGCCTCGAGGACTCTTCCAGTACGGAGTTTCGCATCATCCGTGCCAGTA
GACTGCGTGACTTCCCTCACTATCAATGAGACCCAGTCATCAGCACTCGCTGGTGAAGCAGCAGTCTCCTTAATAGCGGCAGATCT
TTCCTCCTCAGCAGATACCAAAGCGTATAAGCTTTTCATAGCAGCATTTAAGTCACTCCCATGTCCTTCCAACGCCTCCACAAGAA
CGGAGAGTTCAAGAGGAGGAGGAGGAGGACCAGTTTGGAGGATTGGAAGGGGAATAACATCGGAACCTCTTCGAAGACGGCGGCGG
AGAAGGAGTTTCTTCGAAGTAAGATCTCTTACTTCCGCAATATACGGCAGACATGGCTGGTGAAATTGACGGATGATTCGATCCGA
ATGAGGCCTAAAATCTCAATTAAGTTAGGGTTTGGTTTGGAGGAGGAAGGAGATGATTAGAGGCAAAGGTAACCCTCAGATCCGAG
ATTCGTGAGGAGCGTCCAAGTTTATCTATCAGGTTTTAGGTTTTTCGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_565228 uncharacterized protein [Arabidopsis thaliana]5291e-051
XP_002887849 hypothetical protein ARALYDRAFT_477252 [Arabidopsis lyrata subsp. lyrata]5291e-051
NP_001185446 uncharacterized protein [Arabidopsis thaliana]5291e-051
XP_002325204 predicted protein [Populus trichocarpa]3821e-034
XP_002517660 conserved hypothetical protein [Ricinus communis]3793e-034

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SSD3 F18B13.13 protein5299e-052
B9IMV5 Predicted protein3821e-034
B9RV91 Putative uncharacterized protein3792e-034
B9SME8 Putative uncharacterized protein3641e-032
C6TG64 Putative uncharacterized protein3603e-032

Arabidopsis top hits (Blast detail)Scoree value
AT1G80040.1 unknown protein5351e-054
AT5G32440.1 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).3323e-031
AT1G80040.2 unknown protein1972e-015
AT5G02510.1 unknown protein1943e-015
AT5G32440.2 LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1173e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  50%
 
81  50%

Unigene MembersMember information