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Information for unigene UN42945
| FASTA Sequence |
| Unigene ID: UN42945 | Length: 943 |
SSR | | TTTTTTACTTGAAAGGAAAGCTCTTTGAAACGCCGCTCCGTCTTCTTCGTCGTTCTGTGCTTCCCATCTCTTCTTCTCTCTTTACC
CTCTATAAACATTTAATCGAGATATGGGTCTAACGGAAGAAGAAATCAAAAGACTTTACAGGATCCAGAAGACGTTGATGCAGATG
CTCAAGGACCGTGGCTACTTCATCGCCGACTCTGAGATCACCATGAGCTTATCGCAGTTCGTTAGGAAGTACGGAGACAACATGAA
AAGAGAAGATCTTGTTACTCTCAAAGCTAAGCGAAACGACAGCAGTGACCAGCTCTATATCTTCTTCCCTGATGAGGCGAAAGTTG
GGGTTAAGACGATGAAGGTGTACACAAACAGGATGAAGTCAGAGAATGTTTACAGAGCTATCTTGGTGGTGCAGCAGAACTTGACT
CCTTTTGCTCGAACTTGCATCAGTGAGATCTCTTCTAAGTTTCATTTGGAAGTCTTCCAGGTACTAAACACACACTTTCTTTGAAT
TCTTCTGTCTGGTGATGTGTATTCAACATCATCACAATCATCAAACCATGTTGTGGTGTGGTGTGGTGTGGTGTGGTGTAGGAGGC
GGAAATGCTAGTGAACATTAAAGAACATGTTCTTGTTCCGGAGCACCAAGTTCTAACCACTGAGGAGAAGAAAACTCTTCTTGAGA
GATACACTGTCAAGGAGACACAGCTTCCAAGGATCCAAGTGACTGATCCAATCGCAAGATACTTTGGGCTAAAACGTGGACAAGTT
GTGAAGATCATACGTCCGAGTGAAACTGCTGGGCGTTATGTTACCTACCGTTATGTTGTATAAGCAAAAAGGTTTTGTTGTGCGAC
TGGAAACGCTTAGAGTTGCTGTGTACCAAATTGTTGACGATATTGTTTGTTAAGTGTACGAATTAAAAAAACCTTACAACGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885498 ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata] | 597 | 1e-059 |
| NP_188871 DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana] | 592 | 5e-059 |
| XP_002331171 predicted protein [Populus trichocarpa] | 531 | 6e-052 |
| XP_002284107 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 519 | 1e-050 |
| ACU13177 unknown [Glycine max] | 485 | 1e-046 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 308 | 2e-027 |
| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 308 | 2e-027 |
| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 300 | 2e-026 |
| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 300 | 2e-026 |
| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 299 | 2e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O81098 AT3g22320/MCB17_5 | 592 | 3e-059 |
| B9N7D1 Predicted protein | 531 | 4e-052 |
| C6SVA4 Putative uncharacterized protein | 485 | 9e-047 |
| C6SXZ4 Putative uncharacterized protein | 482 | 2e-046 |
| A9RWG5 Predicted protein | 429 | 3e-040 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G22320.1 NRPB5; DNA binding / DNA-directed RNA polymerase | 592 | 2e-061 |
| AT5G57980.1 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase | 237 | 3e-020 |
| AT2G41340.1 RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase | 208 | 7e-017 |
| AT3G57080.1 NRPE5; DNA binding / DNA-directed RNA polymerase | 197 | 1e-015 |
| AT3G54490.1 RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase | 180 | 1e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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