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Information for unigene UN42980

FASTA Sequence
Unigene ID: UN42980Length: 1161 SSR 
GGATAATAAGCAGCTATACTCTCTCTGCCTAAATCTTTTCCTTTTATATCCGTTGTCTTTCTCTCTCTCTCTATATTATATATAAA
TAGAAACCATGGGAATAGCAGAAGAAAGCAGCAAGCCAATGTGGGGGAGCATCAGCCACGCTTCTCCAGGCCACGCTCTCAGTGGC
AAAATCATGATTTCCTCCGTCATCATCCTCTCCGTCGCCCTTACTATGATCATCTGCTTCCACAGCTACGCCAGATGGCTATTCCG
TCGTCAGAACCGTCGCATTCGCCGCCGGATTCGTGCTCACATCCTTTCTCTCTCCTCCTCCTCTCTCACCCCTCTCGATCCAGCGG
TGCTCGAGAAGATTCCGATCTTCGTTTACTCCTCGGAGACTACTCATCAATCGCCACTGGAGGAGTGTTCCGTTTGCTTGTCGGAG
TTCGAGGAAGATGACAAAGGCCGTCTCCTCCCGAAATGTGGCCACGCTTTTCACGTAGATTGCATCGATACTTGGTTCCGTTCCAG
TTCCACTTGCCCTCTTTGCAGAGCTCCGGTTCAACCAGAATATCTGTCGACACTACCCGAACAAGCCGCTCCGGTTAAACCGGTCG
AGGACATTGAAACCGGAAGTTCTTCTTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCGCCGTTGAGGTTTCCTCTGGAGGCGTGC
GAGAGAGAACCGATAGATTTGGTTGGTCTCACGGTGGAGATTCCCGCAGAATTTGAAGGCTCTGTTAACCCGGTTTTATCATTGAA
AAGGTTATGGAGCATCTAAACCGGATGTGGCTTGTGGGCCAAGCAAGCAAACTCAAAAATGGTTTGTATTTTTGCCAAACCGCATT
AACTTTCAGCAGGCCACCAGTGCCGGCCTACGCGGGCGTCATTCCTGGACCCCGAGAGCGTCTTCTTTACATAGTGCTACTGGCCT
AAGAAGAGCTTTTCATTACATTAAAGTTTCATTTGTTAAGTGTATTTATTTAGCATTGTCTCTTGAAAGTTGAAACCAGTTGATTA
TAAATTCCAAAAAGATGACTCGGTTGTGAATATTGCAGCTAAAGTAGAAGTAGTAATTTATTAAGACAAATCGTAATCATTGTTGG
AATGGGAATCAGATACCACTAAATAAAACTGACCCGATTCCAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_191828 RING-H2 finger protein ATL5 [Arabidopsis thaliana]8061e-083
AAD33583 RING-H2 zinc finger protein ATL5 [Arabidopsis thaliana]8014e-083
XP_002878471 hypothetical protein ARALYDRAFT_907844 [Arabidopsis lyrata subsp. lyrata]7924e-082
XP_002882123 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]6161e-061
NP_182278 RING-H2 finger protein ATL64 [Arabidopsis thaliana]6097e-061

Swiss-Prot top hits (Blast detail)Scoree value
Q9LZJ6 RING-H2 finger protein ATL3L8065e-085
O22255 RING-H2 finger protein ATL2N6093e-062
Q8L9T5 RING-H2 finger protein ATL3F3478e-032
Q9SLC3 RING-H2 finger protein ATL2L2662e-022
Q8LF65 RING-H2 finger protein ATL4G2609e-022

TrEMBL top hits (Blast detail)Scoree value
Q0WRF5 RING-H2 zinc finger protein ATL58067e-084
B9HXR4 Predicted protein (Fragment)3936e-036
B9N029 Predicted protein3821e-034
Q5ICP0 RING-H2 subgroup RHE protein3757e-034
B9SAU1 RING-H2 finger protein ATL3L, putative3532e-031

Arabidopsis top hits (Blast detail)Scoree value
AT3G62690.1 ATL5 (ATL5); protein binding / zinc ion binding8064e-086
AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein6093e-063
AT3G16720.1 ATL2; protein binding / zinc ion binding3477e-033
AT2G42360.1 zinc finger (C3HC4-type RING finger) family protein2662e-023
AT4G15975.1 protein binding / zinc ion binding2652e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

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