RadishBase

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Information for unigene UN43042

FASTA Sequence

Unigene ID: UN43042	Length: 1087	SSR
GGGACTTTGAATCAGAAGAAGGGCATATATCGGTCTCCAGCCTTCAAAATTGACGCCAAAACTGTCTCTCTCGACGACGACGACGA GCACCACTCTATCTCTCTCTACCGGAAAACGATTGAACAGCGGGCGATCTTATCAGAATGAGTAACGCGCTTCTCGACATCGATCC TATCGACCTTCAATTCCCTTTTGAATTGAAGAAACAGATCTCTTGCTCTCTCTATTTGGCTAACAAGACCGACAATTATGTAGCCT TCAAGGTTAAAACGACGAATCCAAAGAAGTACTGTGTGAGGCCTAACACTGGCGTTGTTCTTCCCAGATCCTCTTCCGAAGTTCTT GTGACCATGCAAGCGCAGAAGGAAGCTCCTGCTGATATGCAGTGCAAGGACAAGTTCTTGCTTCAATGTGTTGTGGCTTCTCCCGG TGTCACTCCCAAAGACGTTACTCCCGAGATGTTTAGCAAAGAGGCGGGGAATCGAGTTGAGGAGACGAAACTGAGAGTTGTTTATG TTGATCCACCGCAACCACCTTCACCGGTTCGTGAAGGATCAGAAGAGGGCTCTTCACCAAGAGCTTCTGTCTCTGACAATGGGAAC AACAACGCTCCTGACTTTACTGCTGCTCCAAGATTTAGCGTGGACAAGCTTGAACCTCAGGATAACCCATCTGAGGCGAGAGCGCT CATCACAAGGCTCACCGAGGAAAAGAACTCTGCGGTTCAACTGAACAATAGACTTCAACAAGAATTGGAGCAGTTGAAGCGTGGAA GCAATAGAAGTCAGAGTGGTGGTGGAATCCCGTTCATGTACGTTCTTCTGGTAGGACTAATAGGTCTAATCTTGGGATACATTTTG AAGAGGACATGATCACGTTGGAAAAACTATAATACCACACCCACATCAAAAGTGGCTTCGGCAAAAAAAAACCAAAAGACATGGAA AAGAAAAATCAAAACTGTGTCAGAATGACATTCAGTCCTTGTCTTTATCGTCTATCATTTCACCTTTGGTTGAATCTTAAACCTAG TTGCCTTAGAGTATTGATTGTGTTACGGTTTTCATAATACTTACAATTTTCCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata]	1068	4e-114
NP_182039 VAP-like protein 12 [Arabidopsis thaliana]	1056	1e-112
NP_567101 vesicle associated protein [Arabidopsis thaliana]	950	2e-100
AAM63134 putative VAMP-associated protein [Arabidopsis thaliana]	942	2e-099
CBI38911 unnamed protein product [Vitis vinifera]	889	2e-093

Swiss-Prot top hits (Blast detail)	Score	e value
O60119 Vesicle-associated membrane protein-associated protein C16G5.05c	202	5e-015
Q10484 Uncharacterized protein C17C9.12	185	4e-013
Q9P0L0 Vesicle-associated membrane protein-associated protein A	182	1e-012
Q5R601 Vesicle-associated membrane protein-associated protein A	182	1e-012
Q9Z270 Vesicle-associated membrane protein-associated protein A	181	1e-012

TrEMBL top hits (Blast detail)	Score	e value
Q9SHC8 At2g45140	1056	7e-113
Q8VZ95 At3g60600	950	1e-100
Q8LDM1 Putative VAMP-associated protein	942	1e-099
B9RD68 Vesicle-associated membrane protein, putative	867	6e-091
B9GPC4 Predicted protein	862	2e-090

Arabidopsis top hits (Blast detail)	Score	e value
AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule	1072	5e-117
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	966	1e-104
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	711	4e-075
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	697	2e-073
AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein	645	2e-067

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information