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Information for unigene UN43080

FASTA Sequence
Unigene ID: UN43080Length: 919 SSR 
ACTGATTCAGTGTGCTAAGTAAAAGACCCTTCGTTTCTCTCTCTCTCTACCACTAGGAGACTAAAGCTGAGAGAAAGGGCTCAGGC
CTCGAATTAAGGTATGAGTTCACGGAGTGACAGGGTAGTTACGAGAAGCTCAAGGAGGTCACCACAGGTGAACAATGTGAATGGGA
CACAACAAAGTGAACAACCAAGAACTGGACAACAACCTCCAATTGTGTATGGTCCACCGACAATCGATGTTGATGCTATTGAAGAT
GAAGATGATGATGATGTTGTTGAATCAACTGCTTCTGCTTTTGATCGAGCTAAAAGACACAAGTCCGGAGGCTCACAGCGAGGACC
CTTGTTGGTTGATGTAGAGTCAGGTGGTACCACTAGACTAAGCAAAAACCGCACAAAGCGTCAATCTGATCAAGCTAATGTTGAGC
TTAACAATCCGAGAAAGTCTAAGACTGTAGCTCCTCCTGTTGAGGAACCAAAGTTTAACTGCCCAATTTGTCTGTGTCCATTTACT
GAAGAGGTGTCAACGAAGTGTGGTCACATTTTCTGCAAAAAGTGCATAAAGCTCGCTGTATCTGTTCAAGCTAAATGCCCTACGTG
TAGAAAAAGGGTCCTTGCTAAAGACCTCATTCGAGTCTTCCTTCCAACCACCAGATGAGTGATGATACACTGGAACATCACTAGGT
TTAAAATGGTCCTACCCTTGAGAAGATTGGTGTGGGGGAACAGCGCAAGACATGTTTGTTCATGAGTTAATTATCCTTTGTAATGT
GAATATCGTTCTGCTTAGTGAGAGAAACGTTTTAGGAACCAATGAAGACATCTTTTTGATGTGTGTATCATCATCAGTGAGCGACT
CTTTATTGTTGAAATACATGGTTGAATGAATCTTAAGAAAGCATTCTACATCGCTGCGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882517 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]5593e-055
NP_187376 RING/U-box domain-containing protein [Arabidopsis thaliana]5291e-051
BAC43036 putative RING finger protein [Arabidopsis thaliana]5226e-051
XP_002301799 predicted protein [Populus trichocarpa]3731e-033
NP_568701 RING/U-box domain-containing protein [Arabidopsis thaliana]3651e-032

Swiss-Prot top hits (Blast detail)Scoree value
P19474 52 kDa Ro protein1362e-007
Q9D4H7 LON peptidase N-terminal domain and RING finger protein 31316e-007
Q9QZS2 RING finger protein 41244e-006
O88846 RING finger protein 41235e-006
Q3MV19 TNF receptor-associated factor 6-A1219e-006

TrEMBL top hits (Blast detail)Scoree value
Q9SFV0 Putative RING zinc finger protein5297e-052
Q8GX56 At3g072005224e-051
B9GQL0 Predicted protein3738e-034
Q8GS41 Putative RING zinc finger3657e-033
Q94AH4 Putative uncharacterized protein At5g48655/K15N18.13 (Fragment)3657e-033

Arabidopsis top hits (Blast detail)Scoree value
AT3G07200.1 zinc finger (C3HC4-type RING finger) family protein5402e-055
AT3G07200.2 zinc finger (C3HC4-type RING finger) family protein5402e-055
AT5G48655.2 zinc finger (C3HC4-type RING finger) family protein3735e-036
AT5G48655.1 zinc finger (C3HC4-type RING finger) family protein3735e-036
AT5G48655.3 zinc finger (C3HC4-type RING finger) family protein3735e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information