 |
Information for unigene UN43113
| FASTA Sequence |
| Unigene ID: UN43113 | Length: 670 |
SSR | | CTCTTTCTCGTCCATTGTTCCTTCTTCTCTTCCGCCGCCAACCTCAGTGGTCAGACCAAGATTGTCTACTGAAGCTTTTCCAGTAG
ACTCCTGGGAAGAGCCGGTGGGGCCAAGCTCCACCGTCATGACCCAACTAGAATCAGAATTGGAACCGGCGCGTTTTTGCCAAACA
CCAATGTCGGAGCTGTTCGGGTCAAGACGGAGGCAGGTGAGAGATGGCGAAGGAGACTTGCAGCATTTCCTCAGTTTGGCGCTGAG
GATGGAAGAGAGGGGTGAAGATGGTGAAGATAAGGATGAGGATGCAGAGGCTGAAACGTTGGTTTTACTTTCAGACGTGTCTCCGG
TGTTGTTGTTGTTGAGAGGGAAGTTGGTCTTGGCGTTGCGGCCGCTCATTAAAACAGCGGCCTCGTCGTAGGCTCTTGCTGCCTCC
TCCGCACTCTCAAACGTCCCCAGCCAAATTCTCCTTTTCCTTTTTTTTTTTCATTTATCATATAGTCCATAAGCAATAAGTTAACC
AAATTTAAAAAGCTTAAACTATAGATACTAAAAGGGAGTTCAAGTGCTAGCTAGAGAGAGGAAAGCATGAATATATAAGTTCGTGT
GTGTGTGTTTGGTTGTGTACTTGAATGCATCAGGGAAATAAATGAACAACACATAAAAAATGGTAAGG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABB55257 AP2 transcription factor [Brassica carinata] | 650 | 5e-066 |
| NP_172988 ethylene-responsive transcription factor WIN1 [Arabidopsis thaliana] | 599 | 4e-060 |
| AAM62938 putative ethylene responsive element [Arabidopsis thaliana] | 592 | 3e-059 |
| XP_002890099 hypothetical protein ARALYDRAFT_471733 [Arabidopsis lyrata subsp. lyrata] | 576 | 2e-057 |
| ABB55256 AP2 transcription factor [Brassica juncea] | 539 | 4e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9XI33 Ethylene-responsive transcription factor WIN1 | 599 | 2e-061 |
| Q9LFN7 Ethylene-responsive transcription factor SHINE 2 | 358 | 2e-033 |
| Q3E958 Ethylene-responsive transcription factor SHINE 3 | 199 | 5e-015 |
| Q9LW49 Ethylene-responsive transcription factor 4 | 160 | 2e-010 |
| Q94AW5 Ethylene-responsive transcription factor ERF003 | 157 | 3e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A1X3G9 AP2 transcription factor | 650 | 3e-066 |
| A1X3G8 AP2 transcription factor | 563 | 4e-056 |
| A2X252 Putative uncharacterized protein | 452 | 3e-043 |
| B9RV55 DNA binding protein, putative | 452 | 3e-043 |
| Q6Z786 Os02g0202000 protein | 452 | 3e-043 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G15360.1 SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor | 599 | 2e-062 |
| AT5G11190.1 SHN3 (shine3); DNA binding / transcription factor | 358 | 2e-034 |
| AT5G25390.1 SHN2 (shine2); DNA binding / transcription factor | 199 | 4e-016 |
| AT5G25390.2 SHN2 (shine2); DNA binding / transcription factor | 199 | 4e-016 |
| AT5G25190.1 ethylene-responsive element-binding protein, putative | 157 | 3e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
