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Information for unigene UN43145
| FASTA Sequence |
| Unigene ID: UN43145 | Length: 861 |
SSR | | GGGTGGCTGGTTGACTGGAGAGAGAGAGAGATCAGAAAAGCGATGGCTATGGCTACTTGGACTCACCTATCTTCTTCTTCTGCCTC
TTTGTTTCACTCTCAAATTACCAAAAAGCCCTTCCTTCTCCCAGCCGCGGCTGCGACGATCAGCGTTCATGGTTTCTCGCCACGTA
GGCTAAAGTCTCTCTCTTTATCCCAACGTTCTTCAGTCTCGGCTTCGGCTGCTTCCTCCGCCGTCCACGTCAATGAACCGGTGAAG
AAATCAGCGAGAACGCTTCCGTTTCGAGTAGGTCACGGGTTCGATCTGCACCGTTTAGAGCCAGGGTACCCTCTGATAATAGGCGG
GATTGATATCCCTCACGATAGAGGCTGCGAAGCTCACTCCGATGGGGATGTGTTGCTTCATTGTGTAGTGGATGCTATCTTGGGAG
CGTTAGGGCTTCCTGATATAGGCCAGATTTTCCCTGATTCTGATCCTAAGTGGAAAGGAGCTGCATCCTCTGTCTTCATCAAAGAA
GCTGTGAGACTTATGGACGAGGCAGGGTACGAGATAGGAAACCTAGACGCCACATTGATTCTACAGAGACCCAAGATAAGTCCACA
CAAGGAGACTATCCGATCCAATCTGTCCAAGCTTCTTGGTGCAGACCCTTCTGTTGTCAACTTAAAAGCTACTCACGAGAAAGTTG
ATAGCCTTGGAGAAAACAGAAGCATTGCAGCTCATACTGTTATTCTCCTCATGAAGAAGTGAGTCGGTTTTTATCATATTCTTTAT
GTATCAGTCTCATTAAAAAAATACTTTATACGTAAATGTAAACTCGGTGTAATCACCCTTTTGACTTTAGATAAACCATCCATTAC
C
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAF81514 2C-methyl-D-erythritol 2,4-cyclodiphosphate [Brassica rapa] | 1044 | 2e-111 |
| AAM62786 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis thaliana] | 957 | 2e-101 |
| NP_850971 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis thaliana] | 954 | 5e-101 |
| XP_002886373 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis lyrata subsp. lyrata] | 947 | 3e-100 |
| XP_002304519 predicted protein [Populus trichocarpa] | 817 | 3e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9CAK8 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic | 954 | 2e-102 |
| Q9M4W3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic | 785 | 8e-083 |
| Q2NAE1 Bifunctional enzyme ispD/ispF | 429 | 2e-041 |
| Q747A0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 411 | 2e-039 |
| Q1LLZ4 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 407 | 5e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8CF47 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 1044 | 1e-111 |
| B9GWV6 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 817 | 2e-085 |
| B9GKD1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Fragment) | 815 | 4e-085 |
| A9ZN12 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 812 | 9e-085 |
| A7BG58 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 809 | 2e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G63970.1 ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 955 | 1e-103 |
| AT1G63970.2 ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 891 | 4e-096 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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