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Information for unigene UN43200
| FASTA Sequence |
| Unigene ID: UN43200 | Length: 907 |
SSR | | GGGTCCGTCCATCTCTCTCGAAATATCTTATCTATGGCTGCTCTCCACACGTTAGTCTCCTCCACTCGTCTCTCCGTGTCCCTCCC
GTACCATCACGAGCTCCCCACGCGCCGCCGTTCCCATTTGACGTTAGCAACTCTTGCCTCATCGTCTCCTCCGGAGTCGTCTGCAT
CATCTAACTCTAGCTCGATCCCCGGCGCCAACGGGAACACGTTGTCAAACTCTTACGGAACTCATGATAAGGTTGTGGATGATAAG
AACACTCTCTTTGCTCGCTTCTTTCGTTCCACCGAGTCTAACGTTGAGAGGATAATATTTGATTTCCGGTTCCTGGCGCTCTTGGC
GGTAGGAGGTTCGTTAGCTGGTTCGCTACTCTGCTTCCTCAATGGATGTGTCTATATCATCGAGGCATACAAAGTCTATTGGACTA
ACTGTGTCAAAGGCATCCACACCGGCAAAATGGTTTTACGTCTAGTCTAAGCTATCGATGTTTATCTGGCTGGGACAGTTATGTTA
ATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTAACTCGCCTCCTGATGTCCCTCCGGAATCCGACCGTGCCCTTAAAGCCTC
TTCACTCTTTGGAATGTTTGCCATGAAAGAAAGACCGAAGTGGATGAAAATCAGCTCACTGGACGAGCTGAAAACCAAAGTTGGAC
ATGTTATTGTAATGATTCTTCTAGTGAAGATGTTCGAAAGAAGCAAGATGGTTACTATCGCCACAGGATTGGATTTGTTAAGTTAT
TCAGTTTGCATCTTCTTGTCCTCTGCTTCTCTTTATATCCTCCATAATCTCCATAAAGGAGAGAACTGAGTGTACTCTCCCTCCAT
TTGTACAGAACCAAATCCAATATATATATATAACTTTTGTTCTTATT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871581 structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] | 1086 | 2e-116 |
| NP_196876 uncharacterized protein [Arabidopsis thaliana] | 1063 | 1e-113 |
| AAM20133 unknown protein [Arabidopsis thaliana] | 1054 | 1e-112 |
| XP_002274669 PREDICTED: hypothetical protein [Vitis vinifera] | 892 | 8e-094 |
| XP_002517768 conserved hypothetical protein [Ricinus communis] | 872 | 2e-091 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FNA1 Genomic DNA, chromosome 5, P1 clone:MSH12 | 1063 | 8e-114 |
| Q8L645 Putative uncharacterized protein At5g13720 | 1054 | 9e-113 |
| B9RVJ9 Putative uncharacterized protein | 872 | 1e-091 |
| B6SKX4 Uncharacterized protein UPF0114 | 839 | 7e-088 |
| A5AN14 Putative uncharacterized protein | 834 | 3e-087 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G13720.1 LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19390.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 18; Bacteria - 168; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | 1076 | 1e-117 |
| AT4G19390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022348 (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13720.1); Has 553 Blast hits to 553 proteins in 219 species: Archae - 18; Bacteria - 407; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | 449 | 7e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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