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Information for unigene UN43224
| FASTA Sequence |
| Unigene ID: UN43224 | Length: 698 |
SSR | | GGGAATCGCTCGATCTCTCCTTCCTTCCACCATTATTTTTGTTTGTTTGTTTGTTGGGGGTTTATAGATCGGAAGGTCGTAGTTAG
GGTTTAGCAGAGATGAGCCGAAGTCTGGGAATACCGGTGAAGCTTCTCCACGAGGCGTCGGGTCATATAGTGACGGTAGAGCTAAA
GAGCGGAGAGCTCTACAGAGGAAGCATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAGGACATTACCTTTACCGCTCAGG
ATGGTAAGATATCGCAGCTTGAGCATGTCTTCATTCGTGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATTCTCAAGCATGCT
CCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCGGATCACTTGGTGTTGGCAGAGGTAGAGCTGCAATGCGAGGAAA
ACCTCCGGCTACTGGGCGTGGAACTGGAGGAAGGGGAGCAGCACCACCTGTGAGGAGATGATTGAATCTATGCTTAACATGTAAGC
TTCTATCTGCAAACAACGCCAGCGTTTCTTACGTTTGTTGTGTATTGCTTTAAAGTTCACTTGTAGAAACCAAATGTCCTTTTCTA
ACAAGGAGGCAAACAAGAAAGAGAGAGAGAGATGTCCAGATGCACACTTTTAGTTATGTATTTTGAGATGCCAAGATGTTGAAACA
TCGACGAGTT
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| GenBank top hits (Blast detail) | Score | e value |
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| AAM63846 small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] | 631 | 9e-064 |
| NP_564119 small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana] | 627 | 2e-063 |
| XP_002301922 predicted protein [Populus trichocarpa] | 576 | 2e-057 |
| XP_002510673 small nuclear ribonucleoprotein, putative [Ricinus communis] | 574 | 3e-057 |
| XP_002306975 predicted protein [Populus trichocarpa] | 565 | 4e-056 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O44437 Small nuclear ribonucleoprotein Sm D3 | 355 | 4e-033 |
| P62318 Small nuclear ribonucleoprotein Sm D3 | 350 | 2e-032 |
| P62320 Small nuclear ribonucleoprotein Sm D3 | 350 | 2e-032 |
| P62323 Small nuclear ribonucleoprotein Sm D3 | 350 | 2e-032 |
| Q17348 Small nuclear ribonucleoprotein Sm D3 | 320 | 5e-029 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q8LC48 Small nuclear ribonucleoprotein, putative | 631 | 6e-064 |
| Q9LM92 At1g20580/F2D10_6 | 627 | 2e-063 |
| B9GQ12 Predicted protein | 576 | 1e-057 |
| B9R8N0 Small nuclear ribonucleoprotein, putative | 574 | 2e-057 |
| B9H5H6 Predicted protein | 565 | 3e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G20580.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | 628 | 9e-066 |
| AT1G76300.1 SmD3 (snRNP core protein SmD3) | 529 | 3e-054 |
| AT5G27720.1 emb1644 (embryo defective 1644) | 169 | 1e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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