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Information for unigene UN43235
| FASTA Sequence |
| Unigene ID: UN43235 | Length: 860 |
SSR | | GGATGGCTATGGCTACTTGTTGTACTCAGCTATCTTCTTCTTCGTCTCTGTTTCGCTCTCAAATTACGAAAAGACCATTCCTTCTC
CCGCCGGAGAAGATCGAACGTCATGGGTTCTCACCACGGAGGCTAAAGTCCCTCTCTTTGTCTGTTTCCTCCGCCGTCCACGTCAA
TGAACCGGAGAAGAAATCAACGAGAACACTTCCGTTTCGAGTGGGTCACGGGTTCGATCTGCACCGACTAGAGCCAGGGTATCCTC
TGATCATCGGAGGGATTGATATCCCTCACGATAGAGGCTGCGAAGCTCACTCCGATGGGGATGTGTTACTCCATTGTGTGGTGGAT
GCTATCTTGGGAGCTTTAGGGCTTCCTGATATCGGTCAGATCTTCCCTGACTCTGATCCTAAATGGAAAGGATCTGCATCCTCTGT
CTTCATCAAAGAAGCCGTGAGACTCATGGATGAGGCAGGGTACGAGATAGGAAACCTAGACGCCACATTGATTCTACAGAGACCAA
AGATAAGTCCACACAAGGAGACTATCCGATCCAATCCGTCCAAGCTTCTTGGTGCAGACCCTTCTGTGGTGAACTTAAAAGCTAAA
ACCCATGAGAAAGTTGATAGCCTCGGAGAAAACAGAAGCATTGCAGCTCATACTGTTATTCTCCTCATGAAGAAGTGAGTCGGTTT
TTATCATATTCTTTATGTATCAGTCTCATTATAAAAAAGATTTTGTTAATGTAAATTTACTCTTGGTGTAGTCACCCTTTACAGCC
CTTATTAATCCCCTCTTAGCAACAATGAAAATCGAATGATGTGATGATGATGATGATGATATATTAAAAATGGAAATTTTATTCCG
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002886373 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis lyrata subsp. lyrata] | 921 | 3e-097 |
| AAM62786 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis thaliana] | 915 | 2e-096 |
| NP_850971 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Arabidopsis thaliana] | 912 | 3e-096 |
| BAF81514 2C-methyl-D-erythritol 2,4-cyclodiphosphate [Brassica rapa] | 874 | 9e-092 |
| XP_002298012 predicted protein [Populus trichocarpa] | 817 | 3e-085 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9CAK8 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic | 912 | 2e-097 |
| Q9M4W3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic | 780 | 3e-082 |
| Q2NAE1 Bifunctional enzyme ispD/ispF | 431 | 9e-042 |
| Q2KUX6 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 414 | 8e-040 |
| Q747A0 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 414 | 8e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| A8CF47 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 874 | 6e-092 |
| B9GKD1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Fragment) | 817 | 2e-085 |
| B9GWV6 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 812 | 9e-085 |
| A9PB62 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 803 | 1e-083 |
| B3GEM4 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Fragment) | 803 | 1e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G63970.1 ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 923 | 7e-100 |
| AT1G63970.2 ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 859 | 2e-092 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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