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Information for unigene UN43236
| FASTA Sequence |
| Unigene ID: UN43236 | Length: 866 |
SSR | | GGGAAGAGAATCGATTCGATCAATAAAGCAATAGAGACAGAGAAGGAAGAAGAACAAAGCATCTCTCTTTTTGTTTTCTCCGAAGT
CACTGAGAGAGAGAGAGAAGAAGAAAAGTTTGAGTTCAGATGAGTTCTGGAGGAGGAGGAATCGTGGCGGGACCAACAACAGCATC
AGCAGCTCCTGCAAGCGGCGGTGGAAACGTGGAGTGGCACGTCAGACCACCCAACCCTAAAAATCCAGTCGTCTTCTTCGACGTCT
CTATTGGTGGTATCCCCGCCGGTCGTATCAAGATGGAGCTTTTCGCCGACATTGCCCCCAAAACTGCTGAAAACTTCAGGCAATTC
TGTACTGGTGAACTCAGAAAGGCTGGGAAGCCACTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCAAGGATTTTATGATTCA
AAGTGGTGATTTTTTTAAGAATGATGGTAGTGGATGCATGTCAATCTATGGCCACCAGTTCGCTGATGGGAATTTTACTGCCAAAC
ATACTGGTCCTGGATTGCTCTCCATGGCAAATAGTGGGCCAGACACTAATGGTTGCCAGTTTTTCATCAGCTGTGCAAAATGCGAC
TGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTGGGAGATGGTTTACTGGTGGTGCGGAAGATTGAGAACGTGGCTGTTGG
ACCAAACAACCGTCCTAAGCTTGCTGTTGTTATTACAGAGTGTGGGGAGATGTGAGAAATTCTTTTAGCCATGAGAAAAAAAACTT
GAAGAACATTTTGTCATTTAGTTTTCTTTTTCTTTCACTTTGGTTGGTCAACATTTCCGAAAGCAAAAGCCACTTATAAACTTTGG
TTTGGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181407 peptidyl-prolyl isomerase H (cyclophilin H) [Arabidopsis thaliana] | 999 | 3e-106 |
| XP_002881613 hypothetical protein ARALYDRAFT_482885 [Arabidopsis lyrata subsp. lyrata] | 988 | 5e-105 |
| XP_002513025 peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis] | 896 | 2e-094 |
| XP_002304808 predicted protein [Populus trichocarpa] | 888 | 2e-093 |
| ACJ83867 unknown [Medicago truncatula] | 877 | 4e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q0P5D0 Peptidyl-prolyl cis-trans isomerase H | 676 | 4e-070 |
| O43447 Peptidyl-prolyl cis-trans isomerase H | 676 | 4e-070 |
| P0C1I3 Peptidyl-prolyl cis-trans isomerase H | 660 | 3e-068 |
| P52018 Peptidyl-prolyl cis-trans isomerase 11 | 646 | 1e-066 |
| Q5KA96 Peptidyl-prolyl cis-trans isomerase H | 617 | 2e-063 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZVJ4 At2g38730 | 999 | 2e-106 |
| B9RG73 Peptidyl-prolyl cis-trans isomerase | 896 | 2e-094 |
| B9GX77 Peptidyl-prolyl cis-trans isomerase | 888 | 1e-093 |
| B7FGI8 Peptidyl-prolyl cis-trans isomerase | 877 | 3e-092 |
| C6SVG5 Peptidyl-prolyl cis-trans isomerase | 877 | 3e-092 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G38730.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative | 1000 | 9e-109 |
| AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase | 497 | 2e-050 |
| AT3G56070.1 ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | 494 | 4e-050 |
| AT3G56070.2 ROC2 (ROTAMASE CYCLOPHILIN 2); cyclosporin A binding / peptidyl-prolyl cis-trans isomerase | 494 | 4e-050 |
| AT2G16600.1 ROC3; peptidyl-prolyl cis-trans isomerase | 483 | 8e-049 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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