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Information for unigene UN43303
| FASTA Sequence |
| Unigene ID: UN43303 | Length: 951 |
SSR | | CAATTATTCAAAACAGAAACACCAAAGACAAATAGCTAATGTAAGAAACCAAAGTAAACACGTGTTCATAAACGTGTCACTAACAC
AGAGAAGAACCAAAAATCAATAGGAACATTTTCAAAAACGTGTTACGTACTGTGAATCTGTGATCAAACAATCAAATATAAACAGA
GGAAATTTAATTATGGATATGTGACCTAAGAATAAAAGAAAACAAATGAAATTAGAAGTTGAGACAGAGATGAACTGAGAAGAAGA
GAGTAGAGAGATAAGTGAGAAGAAGAGGGTAGAGAGATAAGTGAGAAGAAGAGGGTCGAGAGGGAAGTGAGAAGTCAAAACAACGT
GAGATTTCTAAGGCGCGCCTTTTAATCGCCTTTGACACCATCGATTAAGGCAAAGGCGCACCATGGCGAGCGCTTTGCGGAACCCA
CCCTCGCCTTAGAGGTCTATGGCGTTAGGGCCTTCGCCTTGGTGCGCCTTACGCCATGGCGACAAAGGCGCTCGCCATTTTAAACA
CAGTGGCCATGTCTGCTGCTGATGATGCATGAGGAAGGGTCTAAGCTCCGTCAGGTAAAGGTGTGTTTACCGTACTGATGTAGAGA
ACATTGTTTCCACGGATAAAAGCATCACCGTATTTGCTCTTGAGCTGCCTGTTAACATACTCTTCTGTCTGCTCCATTGCTATGTT
CATGTACCCATCAAGACAAGTAAGGATGCCACGATAATCAACACCAGAGTTGAGCTTGAGAACAACAGGTCTCCCACGGATGGATT
TGAGGAAATCAGAAGGTGTCTTTGTCGTTCCAGAGACTATTATCTCCACTCCCACTCATCTTATCTCTTCTTCTTCAAAGCACGAT
CCTTTAACATACCTGACCTACTCGATTCGACCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTCGTTGGGGGAGCCGAAG
TATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191540 U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana] | 397 | 2e-036 |
| AAM63434 U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] | 389 | 2e-035 |
| XP_002876525 hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp. lyrata] | 389 | 2e-035 |
| XP_002880069 hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp. lyrata] | 379 | 3e-034 |
| NP_181909 U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana] | 373 | 1e-033 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P62312 U6 snRNA-associated Sm-like protein LSm6 | 323 | 4e-029 |
| P62313 U6 snRNA-associated Sm-like protein LSm6 | 323 | 4e-029 |
| A8NHT8 U6 snRNA-associated Sm-like protein LSm6 | 267 | 1e-022 |
| B0DWN3 U6 snRNA-associated Sm-like protein LSm6 | 266 | 1e-022 |
| Q4PG71 U6 snRNA-associated Sm-like protein LSm6 | 252 | 6e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M1Z3 Putative U6 snRNA-associated Sm protein | 397 | 1e-036 |
| Q8LCS5 U6 snRNA-associated Sm-like protein | 389 | 1e-035 |
| O22823 AT2G43810 protein | 373 | 9e-034 |
| B9T839 Small nuclear ribonucleoprotein f, putative | 371 | 1e-033 |
| C6SY16 Putative uncharacterized protein | 371 | 1e-033 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 398 | 6e-039 |
| AT2G43810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 374 | 4e-036 |
| AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative | 374 | 4e-036 |
| AT4G30220.1 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) | 167 | 4e-012 |
| AT2G14285.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species: Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | 122 | 6e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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