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Information for unigene UN43342

FASTA Sequence
Unigene ID: UN43342Length: 871 SSR 
AGTCTCGTCTCGGTCACACAAATAACAAAAAAGAAAACACATTACAACAACTTTTATCCAGAGATGCAAATGTCAGAATTTCAGAC
CAAACAACAAACTGAAGAAGCATAAAAAAACAGAGCACCAACCTAAATAAAGATGATTACTAAAGTAACCAAATACCTCTCTTCTG
TTCGGATATTACACAAAAGGCTACAAGCTACCATAAATATCACTGTTGTTGAAGAAGGCGTCTTCTGAGAAATTATGAGATAGTTC
TGCGATTGATATATCTTCTGGCAAATGATGATGATTATTGTTGTTTGACACTGCTTTGAAACTGTTATTGCGGCTTGGAACTCGAC
CTCCTCCTCCTCCTCCTCCTGAGATGCTGGAAGTGGAAGCAGTTGGGTTTCTCTCTGCGTTACTGTTGCCACCACCACTCTGACCT
GAAAACGCTTGTTGCTGTTGTTGCAAGCTTGGTCCGTTTTCAGATATCTCCTGTAACAGCTGATTAAGCATCTGCTGCTCCTGGTT
GTTGTTGCCATGTGAATGTGGTGGTTGCAAATGATGAGGATGATTATGCTGAAGCGTGTTGGGAGGTGGTCCATTCATGGTGCGCT
GCTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGTTGCATTTGTGGAGAGCTGGGGAATCCAACTGTTGATAAGTTCTGCCTCTGA
TGGGAGGAAGAAGATGGACTCTGGGTTGGGTTCTGACTAGAGAAACCCTCTTGTTTGACCACCGTAGTTGAGTTTGGGTTATTCAT
AGCGTTTTGTCTCATAAGCATGCTTTGGTAGTTGGTCAGAGCTGCTGCAGCTTGAGCCGAGCCATTCATAGCTCCACGACCAACAA
GTTGATGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB81362 putative protein [Arabidopsis thaliana]6597e-067
CAA18174 putative protein [Arabidopsis thaliana]6597e-067
NP_194282 protein SEUSS-like 1 [Arabidopsis thaliana]6597e-067
XP_002867606 hypothetical protein ARALYDRAFT_492274 [Arabidopsis lyrata subsp. lyrata]6363e-064
XP_002869669 hypothetical protein ARALYDRAFT_354233 [Arabidopsis lyrata subsp. lyrata]6221e-062

Swiss-Prot top hits (Blast detail)Scoree value
P34103 Protein kinase 4 (Fragment)1451e-008
P36417 G-box-binding factor1442e-008
Q54IT1 Putative uncharacterized protein DDB_G02885371423e-008
Q54UK0 Phospholipase D A1414e-008
Q55DD4 Serine/threonine-protein kinase pakD1397e-008

TrEMBL top hits (Blast detail)Scoree value
O65609 At4g255206595e-067
Q0WVM7 Putative uncharacterized protein At4g255206595e-067
Q9M0K8 Putative uncharacterized protein AT4g25520 (Fragment)6595e-067
Q3E7E5 Putative uncharacterized protein At4g25515.16084e-061
B9ID32 Predicted protein (Fragment)3361e-029

Arabidopsis top hits (Blast detail)Scoree value
AT4G25520.1 SLK1 (SEUSS-LIKE 1); transcription regulator7249e-077
AT4G25515.1 SLK3 (SEUSS-LIKE 3); transcription regulator6763e-071
AT5G62090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink).1396e-009
AT5G62090.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink).1396e-009
AT4G32551.1 LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor1182e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information