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Information for unigene UN43398

FASTA Sequence
Unigene ID: UN43398Length: 673 SSR 
GACCGTATGGAGACATATACTTGCAGAACAGAGAAAATATATATCTCAACCACAACATGAACATCAACACACTGTAATTAATAATG
ATATGACTCAGGAGAATTACGCAAAAACCAAAACATATTTCAACCACAACGTGAACATCAACACACTTCACAAAAGAAACATGAAA
AAAACCTGCAATTTTCTGCAGTTTGCAACACCACTCCCCAACAAATCGGATAGCGAGAGGAAGAAGAGATAAGGTCTTGAACGGCA
CTCATGGTGGGCATAGCTGAAATAGCTCCTCTCTTAGCTTCTTCTCATCATTGGAACTTGGAGGGAGTTTTACGACCACGGTGGTG
ACGGAGGAGGGAAGAGAGAGCATGGCGGAGGAGAAGCGATGAGATGAAGCCCAGAGGAAGTCGGTGATGAGGCCGAAGGCTAAAAG
GGCGAGGAATGAAGCGAACACAAGGCGCCCATAACTCTGCTTTCCCGCTGGCTTCACCATATCTCTCTCTCTGTCTTTCTCTAAAT
TGGCATCTCCCTGAAGGGTTTCACGAGCTTCAAGCAAAGGTTAAACCTTTGGATTCAGTCGAAACGAAACACAATGGTGTTGGAGG
ATGCAGCGGTGATGGATCTTGTGATCTCGGAGCGTGACTCAGAGAGAGAGAGAGAGAGGGCCAATGGCTAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883284 hypothetical protein ARALYDRAFT_318850 [Arabidopsis lyrata subsp. lyrata]1845e-012
AAG52629 unknown protein; 27363-23366 [Arabidopsis thaliana]1802e-011
NP_175565 kelch-like motif-containing protein [Arabidopsis thaliana]1721e-010

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C8K6 Putative uncharacterized protein F5D21.241801e-011
Q84VX7 At1g515401729e-011

Arabidopsis top hits (Blast detail)Scoree value
AT1G51540.1 INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species: Archae - 11; Bacteria - 200; Metazoa - 1128; Fungi - 24; Plants - 53; Viruses - 41; Other Eukaryotes - 114 (source: NCBI BLink).1726e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  100%

Unigene MembersMember information