RadishBase

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Information for unigene UN43410

FASTA Sequence

Unigene ID: UN43410	Length: 713	SSR
AATCAAAAGTTTCTAGCAGATTATATTTTTTTCTTCTTAGCTTATTATTAGCTGTCTCCTCAATGGGTTGCAAAACAGATACAGAT AGCCTCAATGCATTTATTGATGTCTTAGGTTTTAGCAGATAGCTAGAGATTACAAGCAAATATGGAGAAACACAGAGATTACAAAG AGACTGACAGAAGAGAGCAAGCAAAGCCTAGTAGTTCATGAGACGTTTCAAATGTCTTTTTTTTATTGAGTTGTGTTTCTACGCCT TCTCTGATTGTGTCCAGCTAAGCGTCTCCTGCAACTCCGCTTTGTGTCATCAAACTCACCTAGCTCGTGAAACCTGCTACATTGTT GGCAGAAACGTTGGTAAAGACCAGAGATCCGAACAATAGGAGCTTTGGCATGAAACTCGCAGACTTTGTGTCGTTTGTGGTATTGT TTGGCTCTGCTCATATCTGCAGTACATCTCTCCACTTGACAAGCTCCAGTAGTACCACTGCTACTACTTGTAGTAGTAGTAGCTTT GCCTTTCTGCTTCTTTTCCAAAGCCACTTCTTCTTCCTCTTCTTCCTCTTCAGATGTATCCTCCTCTTCCTCACTCATGTCTCTTA AAATCTTCTTCCCTTCCGCTTTGCTTCCTCTCGTACTCATCTTCAGAATTCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002879473 hypothetical protein ARALYDRAFT_482334 [Arabidopsis lyrata subsp. lyrata]	504	5e-049
NP_565771 squamosa promoter-binding-like protein 3 [Arabidopsis thaliana]	495	5e-048
CAB94233 Squamosa promoter binding protein-like 3 [Arabidopsis thaliana]	491	2e-047
AAM67271 putative squamosa-promoter binding protein [Arabidopsis thaliana]	491	2e-047
XP_002509450 Squamosa promoter-binding protein, putative [Ricinus communis]	412	2e-038

Swiss-Prot top hits (Blast detail)	Score	e value
P93015 Squamosa promoter-binding-like protein 3	495	2e-049
Q38741 Squamosa promoter-binding protein 1	380	5e-036
Q9S7A9 Squamosa promoter-binding-like protein 4	359	1e-033
Q6Z461 Squamosa promoter-binding-like protein 13	324	2e-029
Q38740 Squamosa promoter-binding protein 2	323	2e-029

TrEMBL top hits (Blast detail)	Score	e value
B9RBB6 Squamosa promoter-binding protein, putative	412	2e-038
B9N3H7 Putative uncharacterized protein	385	2e-035
Q52UU1 Squamosa promoter binding-like protein	383	4e-035
Q84JE4 Squamosa promoter binding like-protein	372	7e-034
A1YWL8 Squamosa promoter binding protein-like protein	368	2e-033

Arabidopsis top hits (Blast detail)	Score	e value
AT2G33810.1 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3); DNA binding / transcription factor	496	2e-050
AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor	359	1e-034
AT1G53160.1 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor	359	1e-034
AT3G15270.1 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor	323	2e-030
AT2G47070.1 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor	302	6e-028

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

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