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Information for unigene UN43505
| FASTA Sequence |
| Unigene ID: UN43505 | Length: 689 |
SSR | | TTTCCAGGGTTGTATAAACCTTGAGAAGGATCCCAAGGTCCAACAAAAGAATTGGTCCATGTGGTAAGAAAGCCTTCCTTCTGCAA
CCGAAGATGAGATGAAAGCACAAGATATGTCGCTACATCATTCTGCTCACCTCTACAACTCCAGAGAGAGAGTTAGTTACAGCAAC
TGATTAGTACTCACTAAAACTCCCAATTGAAAAAAAAAAAAGGAACAAAAAATAAAAATAAAAAAGAAAGAACCTTGTATCAGAGC
TAGGATTGAGCTCAGCTTCACTAGGAAGAAACTGAAACCAAGAAACATTATGTAGACCTCCCTGTGGAAGTGGAATTAGTAGTAGT
ACAAGGTTATCAAAATCATTTATTTTCTCTCAAAGTGAAAGGCTTGTAGTATGAAGAAGAAGAAGAGGTTTAGAACAAAAGAGAGA
ATGACTTACAATTCTGAAAACATTGGTCCACATCGTTTTCTCCCACTCAAACAAACTCACTACTTTGAATGAATCGTGAAGACACT
ATGAAGCTCGGTACCGCGAGGGAAGCACGATTCCAATCATAAAGGCAAAGACTATTGTCGGAGGAAGAGTGATCGGAAGATTCTTC
TTCTTCTTCTACGATCTTTTCTCTCTCTCTCTCTCTCTCTCTCTGTACGACTCGTTTCCCGTGGTTTCACTTTTCATGTAAAACCC
C
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002891829 hypothetical protein ARALYDRAFT_314757 [Arabidopsis lyrata subsp. lyrata] | 244 | 6e-019 |
| NP_849809 RNA polymerase II transcription mediator [Arabidopsis thaliana] | 240 | 2e-018 |
| AAG51574 acetyl-CoA synthetase, putative; 45051-31547 [Arabidopsis thaliana] | 240 | 2e-018 |
| NP_001185237 RNA polymerase II transcription mediator [Arabidopsis thaliana] | 240 | 2e-018 |
| XP_002304854 predicted protein [Populus trichocarpa] | 200 | 8e-014 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C8A3 Acetyl-CoA synthetase, putative; 45051-31547 | 240 | 1e-018 |
| B9GY65 Predicted protein | 200 | 6e-014 |
| B8AYR9 Putative uncharacterized protein | 181 | 9e-012 |
| B9FPV8 Putative uncharacterized protein | 181 | 9e-012 |
| C5Z232 Putative uncharacterized protein Sb10g000410 | 175 | 4e-011 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55325.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAP240 (InterPro:IPR009401); Has 190 Blast hits to 182 proteins in 65 species: Archae - 0; Bacteria - 45; Metazoa - 113; Fungi - 3; Plants - 23; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | 240 | 8e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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