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Information for unigene UN43522
| FASTA Sequence |
| Unigene ID: UN43522 | Length: 1767 |
SSR | | TCTCTCTCCTCTCCGCCGTCACTCTCTCTCTTCTCCTCACCACCACCACCCATGCTTCATCTCGCTCTCTACTAACTCCACATGAA
ACCACAGTCCTCGACGTCGTCTCATCTCTCCAGCAAACCCAACACATCATCTCACTCGACCCGACTGTTTCCTCACTCACCACCAC
CACCACCACCATACCCGAATCCGACCCGGTTTTCCTCAACTCGTCCTCCCCACTATCTCTCGAGCTCCACTCCCGAGACACACTCA
CCGCATCGCAGCACAAGGACTACAAGAGCCTAGTACTGAGCCGACTCGAGCGAGACTCATCCCGAGTCGCCGGAATCTTCACCAAG
ATCCGGTTCGCCGTCGAGGACATCGACAGATCCGAACTCAAACCCGTCTACAACGACGACACCTCATCATACCGACCCGAGGATCT
GACCACCCCCGTCGTCTCCGGAGCCAGCCAAGGAAGCGGCGAGTACTTCTCCCGCATCGGAGTCGGAACTCCGGCGAAGGAGATGT
TCATGGTGCTCGACACCGGAAGCGACATCAACTGGATCCAGTGCCAGCCTTGCTCTGACTGCTACCAACAATCCGACCCGGTTTTC
GACCCGGCTTCCTCCTCCACGTTCAAGTCTCTCCCCTGCTCCGCTCCCCAGTGCGGTTCTCTAGAAATCTCCGCCTGCCGCTCCGA
CAAGTGCCTCTACCAAGTTAGTTACGGAGACGGATCTTTCACCGTTGGAGACTACGCCACCGATACGGTGACGTTTGGTACCAACG
GTAAAGTGAACGACGTCGCTTTGGGGTGTGGGCATGATAACGAAGGTCTTTTCACTGGAGCGGCCGGTTTACTCGGTTTAGGAGGT
GGAGCTTTGTCTATGACTAATCAGATCAAAGCGACGTCGTTCTCATATTGTTTAGTTGATCGAGACTCGGGGAAGTCCTCAAGTCT
CGACTTCAACTCGGTCCGAGGCGGAGCCGCCGCTTCAGATGCGACGGCTCCGCTTCTCCGCAACAGCAAGATCGACACCTTCTACT
ACGTCGGACTCAGCGGGTTCACCGTCGGCGGTCAGCAAGTCTCCATCCCTTCGTCGGTCTTCGCCGTCGACGCTTCCGGCGCCGTA
GGAGTGATCCTCGACTGCGGAACCGCCGTGACTCGTCTCCAGACTCAGGCCTACAACTCGCTTCGCGACGCGTTCGTGAAGCTCAC
CTCGAACCTCAAGAGGGGGGAGTCGAGCATCTCGCTCTTCGACACGTGCTACGACTTCTCGTCTCTCTCCACCGTGAAAGTCCCCA
CGGTGGCGTTTCATTTCACCGGAGGTAAGTCGATCGATCTGCCGGCGAAGAACTACTTGATCCCTGTGGACGATGCGGGGACGTTC
TGCTTTGCTTTTGCTCCGACGTCGTCTTCGTTGTCGATCATAGGGAACGTGCAGCAGCAAGGGACGCGTATCACTTACGATCTGGC
GAATAATCTTATCGGGTTGTCAGCGAATCAATGCTAAAAAGGAAAGTGGATGATGATGACGATGATGATTAGTAGTTTTACAGTTC
TATCAGTAAAACTCTTATTTGTTCTTTGTTTCTTTAATATGGATTACAAAATCTTAAGTGTGAATCTTTTTAATTAATCAGTAGTT
AATTGTTATAAATTTGAAAATGTTGTCTGAGCGAGATGCTTTTTAGTTATTGTCTGATACTTTGTTGTCTTCGTGAGAAAGAGAGA
GCATGTCAATTGGAAGCATGTCAATTAGTAACAAAAGAAAAGTCTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAJ33681 unnamed protein product [Thellungiella halophila] | 2157 | 4e-240 |
| NP_188478 aspartyl protease family protein [Arabidopsis thaliana] | 2110 | 1e-234 |
| AAL87345 putative chloroplast nucleoid DNA-binding protein [Arabidopsis thaliana] | 2107 | 3e-234 |
| XP_002885261 aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] | 2107 | 3e-234 |
| ABK94105 unknown [Populus trichocarpa] | 1621 | 6e-178 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q766C3 Aspartic proteinase nepenthesin-1 | 692 | 1e-071 |
| Q766C2 Aspartic proteinase nepenthesin-2 | 668 | 8e-069 |
| Q9S9K4 Aspartic proteinase-like protein 2 | 237 | 7e-019 |
| P69476 Aspartic proteinase nepenthesin-1 (Fragments) | 143 | 6e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LS40 CND41, chloroplast nucleoid DNA binding protein-like | 2110 | 8e-235 |
| Q8RXI1 Putative chloroplast nucleoid DNA-binding protein | 2107 | 2e-234 |
| A9PCK2 Putative uncharacterized protein | 1631 | 3e-179 |
| B9RE23 Aspartic proteinase nepenthesin-1, putative | 1581 | 2e-173 |
| B9HWK9 Predicted protein | 1403 | 8e-153 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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