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Information for unigene UN43553

FASTA Sequence
Unigene ID: UN43553Length: 997 SSR 
GCCCACGAAATTTTTGTTTTCTCGGCAAAAGCCAACATAATATAATATCCACCATATTAGCACTAAACATAGAGTTCAGAAAAGTT
TCGTCTACCCTGACGATTAGGAAAAAGATAACTAAAACTGGTTCACTCGCAAACTCAAGTTTTGAAAACCAAAAACATCAAAAGTC
TAAAGAGGATTATGGATAGTCTCTTTCTTCTTCATCAGACTTCAAGCAGCTGCACTGTGTTTGGCCTTCGTGTGAGACTGCAAGCC
CATCTCCGAGTTAAACGTTCTGTTGCAGCTTCGAGGTCTCTCCATTACTTCCCGAGCTCTTTACTCCCTTTGATGGATGCGGAGTC
GCAACGTGGACGTGTGGCTTCTTCGATTCTGATTTCTGAGGAGTTACGAATTTAGCCTTCTTGTTTGAAGCAGTCTTCGAGGTGTT
GGCTTCCGCATCTTCAGAGTCAGCATCCTCATCATCACTATCATCTTCATCCTCATCATCATCATCATCTTGCTCGGCCTTGGCAT
CATCATTAGGCAACTGAAAGTTCACCTGTTTCACACCTGATTTCGCAACAGCTGGCTCAGCAGGCTCCTCGTCATCAGACTCAGAA
TCAGATTCATGAGCATCAACTATGTAGCCGGTGAAGAAAACACTCCCATCCTTCCAGCTATGAGACAGCTCAAAAGACCTTGGCAA
CACAATCTCCGTGCACAGCTGAGGAAACTTATCATGTGAGAGCGTCCCAATCAGAAGCTTTTGATCTTCAACTTTCGTGTAGAGCC
TGACAGGCTCGTTCCCACCGTTCTTCTTCTCGCCTAGAGCAGCCAGTGAGATGTGCACAATCATATCCTTCCCAGGATCCACCCTA
AGTGGCTCACCACCCTTAACTTCAACACCCCAGAACTCCATTGATACAATCGGTAACGAGCTGACGGTGACGGTTGCGACGGAGAA
GAGAAGAAGACGAGAGAGCGATTAAAGCTTTTAGGGCGCCGAGTGTGGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195994 histone deacetylase HDT3 [Arabidopsis thaliana]4913e-047
CAB82939 histone deacetylase-like protein [Arabidopsis thaliana]4681e-044
XP_002873185 predicted protein [Arabidopsis lyrata subsp. lyrata]4474e-042
ACZ54946 type 2 histone deacetylase b [Nicotiana tabacum]4214e-039
ACZ54945 type 2 histone deacetylase a [Nicotiana tabacum]4196e-039

Swiss-Prot top hits (Blast detail)Scoree value
Q9LZR5 Histone deacetylase HDT34911e-048
Q9FVE6 Histone deacetylase HDT13583e-033
Q9M4U4 Histone deacetylase HDT33101e-027
O24591 Histone deacetylase HDT13055e-027
Q6V9I6 Histone deacetylase HDT12949e-026

TrEMBL top hits (Blast detail)Scoree value
A9P950 Putative uncharacterized protein3622e-032
A9P9Y3 Putative uncharacterized protein3622e-032
B9MYK2 Histone deacetylase3622e-032
A9P996 Putative uncharacterized protein3487e-031
B9HQL3 Histone deacetylase3487e-031

Arabidopsis top hits (Blast detail)Scoree value
AT5G03740.1 HD2C (HISTONE DEACETYLASE 2C); histone deacetylase/ nucleic acid binding / transcription repressor/ zinc ion binding4911e-049
AT3G44750.1 HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding3583e-034
AT5G22650.1 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase2518e-022
AT5G22650.2 HD2B (HISTONE DEACETYLASE 2B); histone deacetylase2518e-022
AT3G10810.1 zinc finger (C3HC4-type RING finger) family protein1192e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information