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Information for unigene UN43562
| FASTA Sequence |
| Unigene ID: UN43562 | Length: 735 |
SSR | | TTTTTTTGTAGAAATTCATTTTTGCCATTGACAAAGAGACATAAACAAGCATATGTTCCTCAATACATGAAGTGTGTGTATGTATG
TATCATTGTCTCTTATTATATGATGAACAAAAAAGAGATAAAAGAAGAGACGTATCAAGGTTCTAACATGCTTACCCAATATGGCA
ATATCCACCAACATCATCATCATCATCATGAAAAGGAGGCGCATAGATATATATATTACCAGACATCAGGACGAAGCCCTCCGGTA
GCTGGTGGCATCCAGCGACCAGAGTTATAGACGTTTTCGCCAACTTTCCAACCAGGAACATCTTTCATCACATCAGCCTCGTAATC
TAGATACTTCTTCCACTCAGATACAAACCTTTCATCTTCTTCTGCTTGAAGAATGGGAAGAATTGCTCTACGTGCAGCGTATTTCT
CTTCCTTCAACGCCCTGCGGATTTTGTTGCCCTGACCGACTTGGTACATACCCCAAGCAAAGGCACCAGAAACAGCAAGGAAAATA
GCCATGGCGCTTGGACCCGTGTTGGAGATCCGACGAGCATACCGAACCGGCGGGAACCCACCCGGCGGTGGACCATCCTGAAGCAA
AGGCATATCCTTCACACTCGCCATTCCTGCCTTCTTCCTTATCATCGCCTCCGTCATCTTCTTCAACCCCCTGAGATTGATTGATT
ACTCTATCTGATGGATTCCGAACAAGACAATCAGAAAGAAATGTGTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565761 NADH dehydrogenase [Arabidopsis thaliana] | 735 | 8e-076 |
| NP_171957 GRIM-19 protein [Arabidopsis thaliana] | 727 | 7e-075 |
| XP_002892230 hypothetical protein ARALYDRAFT_470446 [Arabidopsis lyrata subsp. lyrata] | 726 | 9e-075 |
| XP_002518172 NADH dehydrogenase, putative [Ricinus communis] | 676 | 6e-069 |
| ACJ85924 unknown [Medicago truncatula] | 674 | 1e-068 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q95KV7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 263 | 2e-022 |
| Q0MQ89 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 260 | 5e-022 |
| Q9P0J0 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 260 | 5e-022 |
| Q0MQ90 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 260 | 5e-022 |
| Q4R6H1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | 258 | 8e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O49313 Expressed protein | 735 | 6e-076 |
| Q8RWA7 Putative uncharacterized protein At1g04630 | 727 | 5e-075 |
| B9RWQ3 NADH dehydrogenase, putative | 676 | 4e-069 |
| B7FME1 Putative uncharacterized protein | 674 | 7e-069 |
| B9GMI9 Predicted protein | 664 | 1e-067 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, plastid, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: MEE4 (maternal effect embryo arrest 4) (TAIR:AT1G04630.1); Has 226 Blast hits to 226 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | 736 | 3e-078 |
| AT1G04630.1 MEE4 (maternal effect embryo arrest 4) | 728 | 2e-077 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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